RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 ZNF764Q96H86 408 aaPredicted RBP12.88□□□□□ -0.35
LDLR-201ENST00000252444 FGF22Q9HCT0 170 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 INPP5EQ9NRR6 644 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 EMC3Q9P0I2 261 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 EBF1Q9UH73 591 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 MKL2Q9ULH7 1088 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 NSG1A0A0A6YYJ2 146 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 ANTXRLA6NF34 631 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 SNAPC5O75971 98 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 CTSLP07711 333 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 CD46P15529 392 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 CSNK1EP49674 416 aaKnown RBP12.88□□□□□ -0.35
LDLR-201ENST00000252444 KEAP1Q14145 624 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 WBP2NLQ6ICG8 309 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 FRRS1Q6ZNA5 592 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 SHFQ7M4L6 423 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 OR8H2Q8N162 312 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 ACOT12Q8WYK0 555 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 RASSF1Q9NS23 344 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 DCAF13Q9NV06 445 aaKnown RBP12.88□□□□□ -0.35
LDLR-201ENST00000252444 HCN2Q9UL51 889 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 CASKO14936 926 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 LYNP07948 512 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 PRKAR1AP10644 381 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 NPPBP16860 134 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 CD47Q08722 323 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 SLC48A1Q6P1K1 146 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 ASRGL1Q7L266 308 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 TRIM73Q86UV7 250 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 OR51Q1Q8NH59 317 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 RNF121Q9H920 327 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 PTRH2Q9Y3E5 179 aaKnown RBP12.88□□□□□ -0.35
LDLR-201ENST00000252444 PCDHB14Q9Y5E9 798 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 ZNF860A6NHJ4 632 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 ENTPD6O75354 484 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 HLA-DPB1P04440 258 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 ZNF20P17024 532 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 EIF1P41567 113 aaKnown RBP12.88□□□□□ -0.35
LDLR-201ENST00000252444 PGFP49763 221 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 SIM1P81133 766 aaPredicted RBP12.88□□□□□ -0.35
LDLR-201ENST00000252444 MINDY2Q8NBR6 621 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 NEURL3Q96EH8 262 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 WDR34Q96EX3 536 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 LRRN3Q9H3W5 708 aa12.88□□□□□ -0.35
LDLR-201ENST00000252444 MBNL1Q9NR56 388 aaKnown RBP12.88□□□□□ -0.35
LDLR-201ENST00000252444 CPSF4LA6NMK7 179 aaKnown RBP12.87□□□□□ -0.35
LDLR-201ENST00000252444 NUDT21O43809 227 aaKnown RBP12.87□□□□□ -0.35
LDLR-201ENST00000252444 DLGAP3O95886 979 aa12.87□□□□□ -0.35
LDLR-201ENST00000252444 AHCYP23526 432 aa12.87□□□□□ -0.35
LDLR-201ENST00000252444 HSD11B1P28845 292 aa12.87□□□□□ -0.35
LDLR-201ENST00000252444 CDH11P55287 796 aa12.87□□□□□ -0.35
LDLR-201ENST00000252444 SELENOVP59797 346 aa12.87□□□□□ -0.35
LDLR-201ENST00000252444 RAPSNQ13702 412 aa12.87□□□□□ -0.35
LDLR-201ENST00000252444 GANABQ14697 944 aaKnown RBP12.87□□□□□ -0.35
LDLR-201ENST00000252444 GPR139Q6DWJ6 353 aa12.87□□□□□ -0.35
LDLR-201ENST00000252444 FAM71E1Q6IPT2 247 aa12.87□□□□□ -0.35
LDLR-201ENST00000252444 TMEM71Q6P5X7 295 aa12.87□□□□□ -0.35
LDLR-201ENST00000252444 GALNT15Q8N3T1 639 aa12.87□□□□□ -0.35
LDLR-201ENST00000252444 GPR78Q96P69 363 aa12.87□□□□□ -0.35
LDLR-201ENST00000252444 CEACAM5P06731 702 aa12.87□□□□□ -0.35
LDLR-201ENST00000252444 F7P08709 466 aaPredicted RBP12.87□□□□□ -0.35
LDLR-201ENST00000252444 FURINP09958 794 aa12.87□□□□□ -0.35
LDLR-201ENST00000252444 ULK3Q6PHR2 472 aa12.87□□□□□ -0.35
LDLR-201ENST00000252444 ENPP6Q6UWR7 440 aa12.87□□□□□ -0.35
LDLR-201ENST00000252444 KRT74Q7RTS7 529 aa12.87□□□□□ -0.35
LDLR-201ENST00000252444 PIGUQ9H490 435 aa12.87□□□□□ -0.35
LDLR-201ENST00000252444 HAT1O14929 419 aa12.87□□□□□ -0.35
LDLR-201ENST00000252444 TAPBPO15533 448 aa12.87□□□□□ -0.35
LDLR-201ENST00000252444 AIFM1O95831 613 aa12.87□□□□□ -0.35
LDLR-201ENST00000252444 PRKAR1BP31321 381 aa12.87□□□□□ -0.35
LDLR-201ENST00000252444 DUS1LQ6P1R4 473 aaKnown RBP12.87□□□□□ -0.35
LDLR-201ENST00000252444 CBLL1Q75N03 491 aa12.87□□□□□ -0.35
LDLR-201ENST00000252444 OR6N1Q8NGY5 312 aa12.87□□□□□ -0.35
LDLR-201ENST00000252444 ITPAQ9BY32 194 aa12.87□□□□□ -0.35
LDLR-201ENST00000252444 DDX31Q9H8H2 851 aaKnown RBP12.87□□□□□ -0.35
LDLR-201ENST00000252444 MED17Q9NVC6 651 aa12.87□□□□□ -0.35
LDLR-201ENST00000252444 TOR4AQ9NXH8 423 aa12.87□□□□□ -0.35
LDLR-201ENST00000252444 CSF2P04141 144 aa12.87□□□□□ -0.35
LDLR-201ENST00000252444 CRABP1P29762 137 aa12.87□□□□□ -0.35
LDLR-201ENST00000252444 CRISP1P54107 249 aa12.87□□□□□ -0.35
LDLR-201ENST00000252444 ELAVL1Q15717 326 aaKnown RBP12.87□□□□□ -0.35
LDLR-201ENST00000252444 ZNF420Q8TAQ5 688 aaPredicted RBP12.87□□□□□ -0.35
LDLR-201ENST00000252444 SLC41A3Q96GZ6 507 aa12.87□□□□□ -0.35
LDLR-201ENST00000252444 CPPED1Q9BRF8 314 aaPredicted RBP12.87□□□□□ -0.35
LDLR-201ENST00000252444 UPB1Q9UBR1 384 aa12.87□□□□□ -0.35
LDLR-201ENST00000252444 A0A087WV62 115 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 A0A0A6YYC8 382 aaPredicted RBP12.86□□□□□ -0.35
LDLR-201ENST00000252444 GABRR3A8MPY1 467 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 A8MUI8 341 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 I3L1I5 382 aaPredicted RBP12.86□□□□□ -0.35
LDLR-201ENST00000252444 EIF4E2O60573 245 aaKnown RBP12.86□□□□□ -0.35
LDLR-201ENST00000252444 ERCC1P07992 297 aaPredicted RBP12.86□□□□□ -0.35
LDLR-201ENST00000252444 EFNA1P20827 205 aaPredicted RBP12.86□□□□□ -0.35
LDLR-201ENST00000252444 TRIM23P36406 574 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 C18orf21Q32NC0 220 aaPredicted RBP12.86□□□□□ -0.35
LDLR-201ENST00000252444 ZNF773Q6PK81 442 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 RPS27LQ71UM5 84 aaKnown RBP12.86□□□□□ -0.35
LDLR-201ENST00000252444 OR10H4Q8NGA5 316 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 OR2T4Q8NH00 348 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 GPBAR1Q8TDU6 330 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms