RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 AGERQ15109 404 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 SNAPC1Q16533 368 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 CRTC2Q53ET0 693 aaPredicted RBP10.05□□□□□ -0.8
USP28-201ENST00000003302 ESPNLQ6ZVH7 1005 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 ANKRD33Q7Z3H0 272 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 ZNF438Q7Z4V0 828 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 NUS1Q96E22 293 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 ZNF354BQ96LW1 612 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 AMDHD1Q96NU7 426 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 CLEC4AQ9UMR7 237 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 DCHS1Q96JQ0 3298 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 A0A1W2PPK0 400 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 C5orf58C9J3I9 102 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 PDPK1O15530 556 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 GNSP15586 552 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 CELP19835 753 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 PSMA1P25786 263 aaKnown RBP10.05□□□□□ -0.8
USP28-201ENST00000003302 TRIM23P36406 574 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 FXYD6P3P58550 94 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 ID2Q02363 134 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 SLC35F1Q5T1Q4 408 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 TYW3Q6IPR3 259 aaKnown RBP10.05□□□□□ -0.8
USP28-201ENST00000003302 WDR88Q6ZMY6 472 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 GALNT12Q8IXK2 581 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 SIRT6Q8N6T7 355 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 ZNF485Q8NCK3 441 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 OR13C5Q8NGS8 318 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 TMEM255BQ8WV15 326 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 FOPNLQ96NB1 174 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 LIPT1Q9Y234 373 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 SAGE2PA6NJ88 616 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 CCDC58Q4VC31 144 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 TMEM31Q5JXX7 168 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 FAM111BQ6SJ93 734 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 EFCAB11Q9BUY7 163 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 MKRN2Q9H000 416 aaKnown RBP10.05□□□□□ -0.8
USP28-201ENST00000003302 SAP130Q9H0E3 1048 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 GALNT9Q9HCQ5 603 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 LAMA5O15230 3695 aa10.05□□□□□ -0.8
USP28-201ENST00000003302 TMCC2O75069 709 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 PAK4O96013 591 aaPredicted RBP10.04□□□□□ -0.8
USP28-201ENST00000003302 CYP2A6P11509 494 aaPredicted RBP10.04□□□□□ -0.8
USP28-201ENST00000003302 ACP5P13686 325 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 ADRB3P13945 408 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 PRKCAP17252 672 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 CERS1P27544 350 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 AHRP35869 848 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 MC3RP41968 323 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 FBXO43Q4G163 708 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 GCDHQ92947 438 aaPredicted RBP10.04□□□□□ -0.8
USP28-201ENST00000003302 MAPKAP1Q9BPZ7 522 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 RNF32Q9H0A6 362 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 CNOT2Q9NZN8 540 aaKnown RBP10.04□□□□□ -0.8
USP28-201ENST00000003302 STUB1Q9UNE7 303 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 PRKNO60260 465 aaPredicted RBP10.04□□□□□ -0.8
USP28-201ENST00000003302 LZTS3O60299 673 aaPredicted RBP10.04□□□□□ -0.8
USP28-201ENST00000003302 NR2F1P10589 423 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 BCL6P41182 706 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 MAGEB1P43366 347 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 HCCSP53701 268 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 TAS2R38P59533 333 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 EFR3AQ14156 821 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 CASP12Q6UXS9 341 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 KCT2Q8NC54 265 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 OR9A2Q8NGT5 310 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 TRIM45Q9H8W5 580 aaPredicted RBP10.04□□□□□ -0.8
USP28-201ENST00000003302 C20orf141Q9NUB4 165 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 ZSCAN32Q9NX65 697 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 SPATA7Q9P0W8 599 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 ACAD8Q9UKU7 415 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 FABP12A6NFH5 140 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 CPNE3O75131 537 aaKnown RBP10.04□□□□□ -0.8
USP28-201ENST00000003302 ADAP00813 363 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 IFI30P13284 250 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 ITGB7P26010 798 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 SOX6P35712 828 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 DDOSTP39656 456 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 SRP9P49458 86 aaKnown RBP10.04□□□□□ -0.8
USP28-201ENST00000003302 NCBP2P52298 156 aaKnown RBP eCLIP10.04□□□□□ -0.8
USP28-201ENST00000003302 PCDH1Q08174 1060 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 SMARCD3Q6STE5 483 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 SLC7A6Q92536 515 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 RNFT2Q96EX2 444 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 C19orf43Q9BQ61 176 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 ATP13A2Q9NQ11 1180 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 MED12Q93074 2177 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 PPIBP23284 216 aaKnown RBP10.04□□□□□ -0.8
USP28-201ENST00000003302 SNRPGP62308 76 aaKnown RBP10.04□□□□□ -0.8
USP28-201ENST00000003302 CSNK1G2P78368 415 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 OLR1P78380 273 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 MRPS15P82914 257 aaKnown RBP10.04□□□□□ -0.8
USP28-201ENST00000003302 RHAGQ02094 409 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 ZFP69Q49AA0 526 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 C6orf132Q5T0Z8 1188 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 CNIH2Q6PI25 160 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 SLC16A11Q8NCK7 471 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 TMEM245Q9H330 911 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 IMP3Q9NV31 184 aaKnown RBP10.04□□□□□ -0.8
USP28-201ENST00000003302 NDOR1Q9UHB4 597 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 ICKQ9UPZ9 632 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms