RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 DCAF4L1Q3SXM0 396 aa2.42□□□□□ -2.02
CD44-239ENST00000639002 TCHHL1Q5QJ38 904 aaPredicted RBP2.42□□□□□ -2.02
CD44-239ENST00000639002 AGBL2Q5U5Z8 902 aa2.42□□□□□ -2.02
CD44-239ENST00000639002 SHQ1Q6PI26 577 aaKnown RBP2.42□□□□□ -2.02
CD44-239ENST00000639002 MSANTD1Q6ZTZ1 278 aa2.42□□□□□ -2.02
CD44-239ENST00000639002 OR7G3Q8NG95 312 aa2.42□□□□□ -2.02
CD44-239ENST00000639002 RFESDQ8TAC1 157 aa2.42□□□□□ -2.02
CD44-239ENST00000639002 FAM46BQ96A09 425 aa2.42□□□□□ -2.02
CD44-239ENST00000639002 RTBDNQ9BSG5 229 aaPredicted RBP2.42□□□□□ -2.02
CD44-239ENST00000639002 DNAJB9Q9UBS3 223 aa2.42□□□□□ -2.02
CD44-239ENST00000639002 SLC2A6Q9UGQ3 507 aa2.42□□□□□ -2.02
CD44-239ENST00000639002 RAB26Q9ULW5 256 aa2.42□□□□□ -2.02
CD44-239ENST00000639002 PDE10AQ9Y233 779 aa2.42□□□□□ -2.02
CD44-239ENST00000639002 A0A0U1RQK1 487 aa2.41□□□□□ -2.02
CD44-239ENST00000639002 SH2D1BO14796 132 aa2.41□□□□□ -2.02
CD44-239ENST00000639002 LCMT2O60294 686 aaKnown RBP2.41□□□□□ -2.02
CD44-239ENST00000639002 CA11O75493 328 aa2.41□□□□□ -2.02
CD44-239ENST00000639002 PDE5AO76074 875 aa2.41□□□□□ -2.02
CD44-239ENST00000639002 NOL4O94818 638 aa2.41□□□□□ -2.02
CD44-239ENST00000639002 VDRP11473 427 aa2.41□□□□□ -2.02
CD44-239ENST00000639002 RPA1P27694 616 aa2.41□□□□□ -2.02
CD44-239ENST00000639002 MAT2AP31153 395 aaKnown RBP2.41□□□□□ -2.02
CD44-239ENST00000639002 POU3F4P49335 361 aa2.41□□□□□ -2.02
CD44-239ENST00000639002 STX1AQ16623 288 aa2.41□□□□□ -2.02
CD44-239ENST00000639002 MPPE1Q53F39 396 aa2.41□□□□□ -2.02
CD44-239ENST00000639002 DDI2Q5TDH0 399 aa2.41□□□□□ -2.02
CD44-239ENST00000639002 TMED8Q6PL24 325 aaPredicted RBP2.41□□□□□ -2.02
CD44-239ENST00000639002 PET117Q6UWS5 81 aa2.41□□□□□ -2.02
CD44-239ENST00000639002 MOB1BQ7L9L4 216 aa2.41□□□□□ -2.02
CD44-239ENST00000639002 PIWIL3Q7Z3Z3 882 aaKnown RBP2.41□□□□□ -2.02
CD44-239ENST00000639002 OR6M1Q8NGM8 313 aa2.41□□□□□ -2.02
CD44-239ENST00000639002 DEPDC1BQ8WUY9 529 aa2.41□□□□□ -2.02
CD44-239ENST00000639002 CPXM1Q96SM3 734 aa2.41□□□□□ -2.02
CD44-239ENST00000639002 THUMPD3Q9BV44 507 aaKnown RBP2.41□□□□□ -2.02
CD44-239ENST00000639002 SLC25A39Q9BZJ4 359 aaPredicted RBP2.41□□□□□ -2.02
CD44-239ENST00000639002 EHD1Q9H4M9 534 aa2.41□□□□□ -2.02
CD44-239ENST00000639002 ZNF331Q9NQX6 463 aaPredicted RBP2.41□□□□□ -2.02
CD44-239ENST00000639002 CYTL1Q9NRR1 136 aa2.41□□□□□ -2.02
CD44-239ENST00000639002 ARMCX3Q9UH62 379 aaPredicted RBP2.41□□□□□ -2.02
CD44-239ENST00000639002 FAM149AA5PLN7 773 aa2.4□□□□□ -2.03
CD44-239ENST00000639002 RANBP6O60518 1105 aaKnown RBP2.4□□□□□ -2.03
CD44-239ENST00000639002 REC8O95072 547 aa2.4□□□□□ -2.03
CD44-239ENST00000639002 SLU7O95391 586 aaKnown RBP2.4□□□□□ -2.03
CD44-239ENST00000639002 HOXB7P09629 217 aa2.4□□□□□ -2.03
CD44-239ENST00000639002 PPOXP50336 477 aa2.4□□□□□ -2.03
CD44-239ENST00000639002 CDKL1Q00532 357 aa2.4□□□□□ -2.03
CD44-239ENST00000639002 LRRC63Q05C16 580 aa2.4□□□□□ -2.03
CD44-239ENST00000639002 TRADDQ15628 312 aa2.4□□□□□ -2.03
CD44-239ENST00000639002 HKDC1Q2TB90 917 aa2.4□□□□□ -2.03
CD44-239ENST00000639002 ATRAIDQ6UW56 229 aa2.4□□□□□ -2.03
CD44-239ENST00000639002 CD164L2Q6UWJ8 174 aa2.4□□□□□ -2.03
CD44-239ENST00000639002 TFAP2EQ6VUC0 442 aa2.4□□□□□ -2.03
CD44-239ENST00000639002 TMEM126BQ8IUX1 230 aa2.4□□□□□ -2.03
CD44-239ENST00000639002 TUSC5Q8IXB3 177 aa2.4□□□□□ -2.03
CD44-239ENST00000639002 ATAD1Q8NBU5 361 aa2.4□□□□□ -2.03
CD44-239ENST00000639002 GLYATL1Q969I3 302 aa2.4□□□□□ -2.03
CD44-239ENST00000639002 AP2M1Q96CW1 435 aa2.4□□□□□ -2.03
CD44-239ENST00000639002 CCSER1Q9C0I3 900 aa2.4□□□□□ -2.03
CD44-239ENST00000639002 ZNF350Q9GZX5 532 aa2.4□□□□□ -2.03
CD44-239ENST00000639002 TSPY26PQ9H489 355 aa2.4□□□□□ -2.03
CD44-239ENST00000639002 TRIM49D1C9J1S8 452 aa2.39□□□□□ -2.03
CD44-239ENST00000639002 TTI1O43156 1089 aa2.39□□□□□ -2.03
CD44-239ENST00000639002 FOXH1O75593 365 aa2.39□□□□□ -2.03
CD44-239ENST00000639002 CENPBP07199 599 aaPredicted RBP2.39□□□□□ -2.03
CD44-239ENST00000639002 SERPINB6P35237 376 aa2.39□□□□□ -2.03
CD44-239ENST00000639002 KCNK10P57789 538 aa2.39□□□□□ -2.03
CD44-239ENST00000639002 RTL6Q6ICC9 239 aa2.39□□□□□ -2.03
CD44-239ENST00000639002 GBP6Q6ZN66 633 aa2.39□□□□□ -2.03
CD44-239ENST00000639002 CCDC83Q8IWF9 413 aa2.39□□□□□ -2.03
CD44-239ENST00000639002 C9orf40Q8IXQ3 194 aa2.39□□□□□ -2.03
CD44-239ENST00000639002 TPRX1Q8N7U7 411 aa2.39□□□□□ -2.03
CD44-239ENST00000639002 RDH11Q8TC12 318 aa2.39□□□□□ -2.03
CD44-239ENST00000639002 TM2D1Q9BX74 207 aa2.39□□□□□ -2.03
CD44-239ENST00000639002 Q9H3A6 140 aa2.39□□□□□ -2.03
CD44-239ENST00000639002 OR7A17O14581 309 aa2.38□□□□□ -2.03
CD44-239ENST00000639002 CPA3P15088 417 aa2.38□□□□□ -2.03
CD44-239ENST00000639002 RBMXP38159 391 aaKnown RBP2.38□□□□□ -2.03
CD44-239ENST00000639002 UFSP1Q6NVU6 142 aa2.38□□□□□ -2.03
CD44-239ENST00000639002 FAM47EQ6ZV65 393 aa2.38□□□□□ -2.03
CD44-239ENST00000639002 SYVN1Q86TM6 617 aa2.38□□□□□ -2.03
CD44-239ENST00000639002 SIDT2Q8NBJ9 832 aaKnown RBP2.38□□□□□ -2.03
CD44-239ENST00000639002 FBXO30Q8TB52 745 aa2.38□□□□□ -2.03
CD44-239ENST00000639002 PTPRUQ92729 1446 aa2.38□□□□□ -2.03
CD44-239ENST00000639002 DHTKD1Q96HY7 919 aaPredicted RBP2.38□□□□□ -2.03
CD44-239ENST00000639002 FUNDC2Q9BWH2 189 aa2.38□□□□□ -2.03
CD44-239ENST00000639002 GANQ9H2C0 597 aa2.38□□□□□ -2.03
CD44-239ENST00000639002 PATZ1Q9HBE1 687 aaKnown RBP2.38□□□□□ -2.03
CD44-239ENST00000639002 DNAJC17Q9NVM6 304 aaKnown RBP2.38□□□□□ -2.03
CD44-239ENST00000639002 KLHDC2Q9Y2U9 406 aa2.38□□□□□ -2.03
CD44-239ENST00000639002 A0A0A6YYC8 382 aaPredicted RBP2.37□□□□□ -2.03
CD44-239ENST00000639002 NPIPA5A0A0B4J1W7 369 aa2.37□□□□□ -2.03
CD44-239ENST00000639002 NPIPA5E9PKD4 350 aa2.37□□□□□ -2.03
CD44-239ENST00000639002 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP2.37□□□□□ -2.03
CD44-239ENST00000639002 I3L1I5 382 aaPredicted RBP2.37□□□□□ -2.03
CD44-239ENST00000639002 WWP2O00308 870 aa2.37□□□□□ -2.03
CD44-239ENST00000639002 MAGEB4O15481 346 aaPredicted RBP2.37□□□□□ -2.03
CD44-239ENST00000639002 HSPA4LO95757 839 aa2.37□□□□□ -2.03
CD44-239ENST00000639002 SCG2P13521 617 aa2.37□□□□□ -2.03
CD44-239ENST00000639002 PTMSP20962 102 aa2.37□□□□□ -2.03
CD44-239ENST00000639002 CAV2P51636 162 aa2.37□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms