RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 DCP1AQ9NPI6 582 aaPredicted RBP5.46□□□□□ -1.53
SCN1A-216ENST00000637968 HEBP1Q9NRV9 189 aa5.46□□□□□ -1.53
SCN1A-216ENST00000637968 ZNF70Q9UC06 446 aaPredicted RBP5.46□□□□□ -1.53
SCN1A-216ENST00000637968 GDF2Q9UK05 429 aaPredicted RBP5.46□□□□□ -1.53
SCN1A-216ENST00000637968 CCL15-CCL14A0A0B4J2E2 113 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 A0A0D9SG52 128 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 A0A1W2PRB8 838 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 SEC14L6B5MCN3 397 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF587BE7ETH6 402 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 LRRN3E7EW58 273 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 ARNTLO00327 626 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 RNF13O43567 381 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 CA12O43570 354 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 SMPD2O60906 423 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 AKR7A3O95154 331 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 NSA2O95478 260 aaKnown RBP5.46□□□□□ -1.54
SCN1A-216ENST00000637968 S1PR4O95977 384 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 PMP2P02689 132 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 SERPIND1P05546 499 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 SLC10A3P09131 477 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 MSX1P28360 303 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 EPHA4P54764 986 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 PTPN11Q06124 597 aaPredicted RBP5.46□□□□□ -1.54
SCN1A-216ENST00000637968 PGM5Q15124 567 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 HMGN3Q15651 99 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 CCL15Q16663 113 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF805Q5CZA5 627 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 PXKQ7Z7A4 578 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 PDZD3Q86UT5 571 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 PHACTR4Q8IZ21 702 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 ULK4Q96C45 1275 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 SLC6A16Q9GZN6 736 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 DEFB129Q9H1M3 183 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 IKZF4Q9H2S9 585 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 LRRN3Q9H3W5 708 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 MYOZ1Q9NP98 299 aaPredicted RBP5.46□□□□□ -1.54
SCN1A-216ENST00000637968 MED17Q9NVC6 651 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 PARPBPQ9NWS1 579 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 FKBPLQ9UIM3 349 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 NDRG4Q9ULP0 352 aaKnown RBP5.46□□□□□ -1.54
SCN1A-216ENST00000637968 MED1Q15648 1581 aaPredicted RBP5.46□□□□□ -1.54
SCN1A-216ENST00000637968 C20orf202A1L168 122 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 HYKKA2RU49 373 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 F5H5P2 479 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 TNFRSF11BO00300 401 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 SIGLEC5O15389 551 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 SOX15O60248 233 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 FKTNO75072 461 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 SEC22BO75396 215 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 SRPRAP08240 638 aaKnown RBP5.46□□□□□ -1.54
SCN1A-216ENST00000637968 BCKDHAP12694 445 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 GABRA1P14867 456 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 SLC2A5P22732 501 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 SDHAP31040 664 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 SOX3P41225 446 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 RBM34P42696 430 aaKnown RBP5.46□□□□□ -1.54
SCN1A-216ENST00000637968 C1QTNF8P60827 252 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 BTN3A2P78410 334 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 SIGLEC14Q08ET2 396 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 AIMP2Q13155 320 aaKnown RBP5.46□□□□□ -1.54
SCN1A-216ENST00000637968 GLYR1Q49A26 553 aaPredicted RBP5.46□□□□□ -1.54
SCN1A-216ENST00000637968 C14orf28Q4W4Y0 310 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 C1orf189Q5VU69 101 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 MTSS1LQ765P7 747 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 ARMCX2Q7L311 632 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 GPC2Q8N158 579 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 OR8J3Q8NGG0 315 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 OR2A12Q8NGT7 310 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF671Q8TAW3 534 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 TMEM163Q8TC26 289 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 MRPS31Q92665 395 aaKnown RBP5.46□□□□□ -1.54
SCN1A-216ENST00000637968 OSTF1Q92882 214 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 HHIPQ96QV1 700 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 MAPKAP1Q9BPZ7 522 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 ATG101Q9BSB4 218 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 RHNO1Q9BSD3 238 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 PRDM12Q9H4Q4 367 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 RRAGCQ9HB90 399 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 NT5MQ9NPB1 228 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 ZIM2Q9NZV7 527 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 TRPC4Q9UBN4 977 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF282Q9UDV7 671 aaPredicted RBP5.46□□□□□ -1.54
SCN1A-216ENST00000637968 NEMP2A6NFY4 417 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 AGAP14A8MT82 685 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 PMM2O15305 246 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 DLEU1O43261 78 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 FZD7O75084 574 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 ENTPD6O75354 484 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 SCG5P05408 212 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 PFKLP17858 780 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 CYP2F1P24903 491 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 PTPN3P26045 913 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 NOS2P35228 1153 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 PITPNBP48739 271 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 CACNB2Q08289 660 aaPredicted RBP5.46□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF543Q08ER8 600 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 ODF4Q2M2E3 257 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 PRAMEF18Q5VWM3 479 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 SLC36A4Q6YBV0 504 aa5.46□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF705AQ6ZN79 300 aaPredicted RBP5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms