RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 MMP20O60882 483 aa10.46□□□□□ -0.74
CLN3-244ENST00000636147 PDHA2P29803 388 aa10.46□□□□□ -0.74
CLN3-244ENST00000636147 TMEM115Q12893 351 aaPredicted RBP10.46□□□□□ -0.74
CLN3-244ENST00000636147 LMAN2Q12907 356 aa10.46□□□□□ -0.74
CLN3-244ENST00000636147 ATXN7L3Q14CW9 347 aaPredicted RBP10.46□□□□□ -0.74
CLN3-244ENST00000636147 NDUFA9Q16795 377 aa10.46□□□□□ -0.74
CLN3-244ENST00000636147 ZNF385BQ569K4 471 aa10.46□□□□□ -0.74
CLN3-244ENST00000636147 UNC5DQ6UXZ4 953 aa10.46□□□□□ -0.74
CLN3-244ENST00000636147 CFAP77Q6ZQR2 320 aa10.46□□□□□ -0.74
CLN3-244ENST00000636147 SERPINA12Q8IW75 414 aa10.46□□□□□ -0.74
CLN3-244ENST00000636147 ZNF680Q8NEM1 530 aa10.46□□□□□ -0.74
CLN3-244ENST00000636147 TRMT10AQ8TBZ6 339 aaKnown RBP10.46□□□□□ -0.74
CLN3-244ENST00000636147 SLC7A13Q8TCU3 470 aa10.46□□□□□ -0.74
CLN3-244ENST00000636147 SLC38A5Q8WUX1 472 aa10.46□□□□□ -0.74
CLN3-244ENST00000636147 CREB3L1Q96BA8 519 aa10.46□□□□□ -0.74
CLN3-244ENST00000636147 NXPE2Q96DL1 559 aa10.46□□□□□ -0.74
CLN3-244ENST00000636147 C17orf62Q9BQA9 187 aa10.46□□□□□ -0.74
CLN3-244ENST00000636147 QRSL1Q9H0R6 528 aaKnown RBP10.46□□□□□ -0.74
CLN3-244ENST00000636147 MTG2Q9H4K7 406 aa10.46□□□□□ -0.74
CLN3-244ENST00000636147 METTL17Q9H7H0 456 aaPredicted RBP10.46□□□□□ -0.74
CLN3-244ENST00000636147 PDFQ9HBH1 243 aa10.46□□□□□ -0.74
CLN3-244ENST00000636147 MN1Q10571 1320 aaPredicted RBP10.46□□□□□ -0.74
CLN3-244ENST00000636147 ZNF821O75541 412 aaPredicted RBP10.45□□□□□ -0.74
CLN3-244ENST00000636147 EOMESO95936 686 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 HBQ1P09105 142 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 ZNF865P0CJ78 1059 aaPredicted RBP10.45□□□□□ -0.74
CLN3-244ENST00000636147 CCR6P51684 374 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 FXNQ16595 210 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 KANSL1Q7Z3B3 1105 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 ACBD7Q8N6N7 88 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 NANOGP1Q8N7R0 232 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 CHST14Q8NCH0 376 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 SMPDL3AQ92484 453 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 ECHDC3Q96DC8 303 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 SLITRK2Q9H156 845 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 DDX31Q9H8H2 851 aaKnown RBP10.45□□□□□ -0.74
CLN3-244ENST00000636147 CD93Q9NPY3 652 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 CCL27Q9Y4X3 112 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 FEZF1A0PJY2 475 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 ADAM12O43184 909 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 PQBP1O60828 265 aaKnown RBP10.45□□□□□ -0.74
CLN3-244ENST00000636147 ARHGEF15O94989 841 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 ALPPP05187 535 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 HK1P19367 917 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 CR2P20023 1033 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 CD70P32970 193 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 CTSOP43234 321 aaPredicted RBP10.45□□□□□ -0.74
CLN3-244ENST00000636147 PITPNBP48739 271 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 SPINT3P49223 89 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 CRYZQ08257 329 aaKnown RBP10.45□□□□□ -0.74
CLN3-244ENST00000636147 INSL4Q14641 139 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 ZNF79Q15937 498 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 GRHL2Q6ISB3 625 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 ACSM5Q6NUN0 579 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 GDPD4Q6W3E5 623 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 FRRS1Q6ZNA5 592 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 GRAMD2AQ8IUY3 354 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 L3MBTL4Q8NA19 623 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 OR51L1Q8NGJ5 315 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 OR6K6Q8NGW6 343 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 OR51A7Q8NH64 312 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 NDC1Q9BTX1 674 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 ACOXLQ9NUZ1 547 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 TRBV5-3A0A0A0MS03 114 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 ABHD14A-ACY1A0A1B0GW23 586 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 RIIAD1A6NNX1 92 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 ZAR1LA6NP61 321 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 LRRN3E7EW58 273 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 H7C0S8 307 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 INPPL1O15357 1258 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 ARPC5O15511 151 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 EFCAB14O75071 495 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 ZNF250P15622 560 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 SOX18P35713 384 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 AHRP35869 848 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 CTSCP53634 463 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 HYAL2Q12891 473 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 SP140Q13342 867 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 FCRLBQ6BAA4 426 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 ALKAL2Q6UX46 152 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 RD3Q7Z3Z2 195 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 TMC8Q8IU68 726 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 CYB561A3Q8NBI2 242 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 OR4C6Q8NH72 309 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 SORCS1Q8WY21 1168 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 LRRN3Q9H3W5 708 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 B3GNT2Q9NY97 397 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 YIPF1Q9Y548 306 aa10.45□□□□□ -0.74
CLN3-244ENST00000636147 SLC43A1O75387 559 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 HMGN1P05114 100 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 ARAFP10398 606 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 ACADMP11310 421 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 PRKAR2AP13861 404 aaKnown RBP10.44□□□□□ -0.74
CLN3-244ENST00000636147 HSD3B1P14060 373 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 F8A1P23610 371 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 HSD3B2P26439 372 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 SHC1P29353 583 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 ST3GAL3Q11203 375 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 ILKQ13418 452 aa10.44□□□□□ -0.74
CLN3-244ENST00000636147 GPR176Q14439 515 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms