RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 SCMH1Q96GD3 660 aa18.76■□□□□ 0.59
PTCD3-220ENST00000627371 MARK4Q96L34 752 aa18.76■□□□□ 0.59
PTCD3-220ENST00000627371 C5orf34Q96MH7 638 aa18.76■□□□□ 0.59
PTCD3-220ENST00000627371 SIKE1Q9BRV8 207 aa18.76■□□□□ 0.59
PTCD3-220ENST00000627371 EPN3Q9H201 632 aa18.76■□□□□ 0.59
PTCD3-220ENST00000627371 SHANK1Q9Y566 2161 aa18.75■□□□□ 0.59
PTCD3-220ENST00000627371 E9PBE3 544 aa18.75■□□□□ 0.59
PTCD3-220ENST00000627371 KIR3DL1P43629 444 aa18.75■□□□□ 0.59
PTCD3-220ENST00000627371 NME5P56597 212 aa18.75■□□□□ 0.59
PTCD3-220ENST00000627371 UFM1P61960 85 aa18.75■□□□□ 0.59
PTCD3-220ENST00000627371 SRSF11Q05519 484 aaKnown RBP18.75■□□□□ 0.59
PTCD3-220ENST00000627371 RPS6KA2Q15349 733 aa18.75■□□□□ 0.59
PTCD3-220ENST00000627371 INAQ16352 499 aa18.75■□□□□ 0.59
PTCD3-220ENST00000627371 IL20RBQ6UXL0 311 aa18.75■□□□□ 0.59
PTCD3-220ENST00000627371 PRICKLE2Q7Z3G6 844 aa18.75■□□□□ 0.59
PTCD3-220ENST00000627371 DND1Q8IYX4 353 aaKnown RBP18.75■□□□□ 0.59
PTCD3-220ENST00000627371 LCORQ96JN0 433 aaPredicted RBP18.75■□□□□ 0.59
PTCD3-220ENST00000627371 TEX37Q96LM6 180 aa18.75■□□□□ 0.59
PTCD3-220ENST00000627371 VSTM2LQ96N03 204 aa18.75■□□□□ 0.59
PTCD3-220ENST00000627371 BTBD9Q96Q07 612 aa18.75■□□□□ 0.59
PTCD3-220ENST00000627371 NXF5Q9H1B4 397 aaKnown RBP18.75■□□□□ 0.59
PTCD3-220ENST00000627371 FOLH1BQ9HBA9 442 aa18.75■□□□□ 0.59
PTCD3-220ENST00000627371 NEUROD4Q9HD90 331 aa18.75■□□□□ 0.59
PTCD3-220ENST00000627371 NPHS2Q9NP85 383 aa18.75■□□□□ 0.59
PTCD3-220ENST00000627371 NTMQ9P121 344 aa18.75■□□□□ 0.59
PTCD3-220ENST00000627371 ERVK-11Q9UQG0 969 aa18.75■□□□□ 0.59
PTCD3-220ENST00000627371 PRRC2CQ9Y520 2896 aaKnown RBP18.75■□□□□ 0.59
PTCD3-220ENST00000627371 ZNF462Q96JM2 2506 aa18.74■□□□□ 0.59
PTCD3-220ENST00000627371 TTLL8A6PVC2 850 aa18.74■□□□□ 0.59
PTCD3-220ENST00000627371 ACOX3O15254 700 aa18.74■□□□□ 0.59
PTCD3-220ENST00000627371 SP1P08047 785 aa18.74■□□□□ 0.59
PTCD3-220ENST00000627371 FBXO45P0C2W1 286 aa18.74■□□□□ 0.59
PTCD3-220ENST00000627371 PPICP45877 212 aa18.74■□□□□ 0.59
PTCD3-220ENST00000627371 WNT3P56703 355 aa18.74■□□□□ 0.59
PTCD3-220ENST00000627371 SPANXN4Q5MJ08 99 aa18.74■□□□□ 0.59
PTCD3-220ENST00000627371 OR4F3Q6IEY1 312 aa18.74■□□□□ 0.59
PTCD3-220ENST00000627371 SLC25A25Q6KCM7 469 aa18.74■□□□□ 0.59
PTCD3-220ENST00000627371 TMEM178AQ8NBL3 297 aa18.74■□□□□ 0.59
PTCD3-220ENST00000627371 GLB1L3Q8NCI6 653 aaPredicted RBP18.74■□□□□ 0.59
PTCD3-220ENST00000627371 PSMA8Q8TAA3 256 aa18.74■□□□□ 0.59
PTCD3-220ENST00000627371 TMEM125Q96AQ2 219 aa18.74■□□□□ 0.59
PTCD3-220ENST00000627371 SPACA9Q96E40 222 aaPredicted RBP18.74■□□□□ 0.59
PTCD3-220ENST00000627371 THOC1Q96FV9 657 aaKnown RBP18.74■□□□□ 0.59
PTCD3-220ENST00000627371 MAGED4Q96JG8 741 aa18.74■□□□□ 0.59
PTCD3-220ENST00000627371 HES7Q9BYE0 225 aa18.74■□□□□ 0.59
PTCD3-220ENST00000627371 SDR39U1Q9NRG7 319 aaPredicted RBP18.74■□□□□ 0.59
PTCD3-220ENST00000627371 SIRT3Q9NTG7 399 aaPredicted RBP18.74■□□□□ 0.59
PTCD3-220ENST00000627371 FGFR1OP2Q9NVK5 253 aa18.74■□□□□ 0.59
PTCD3-220ENST00000627371 ZIM2Q9NZV7 527 aa18.74■□□□□ 0.59
PTCD3-220ENST00000627371 GPR55Q9Y2T6 319 aaPredicted RBP18.74■□□□□ 0.59
PTCD3-220ENST00000627371 FRG2CA6NGY1 282 aa18.73■□□□□ 0.59
PTCD3-220ENST00000627371 RNASET2O00584 256 aaKnown RBP18.73■□□□□ 0.59
PTCD3-220ENST00000627371 NME2P1O60361 137 aa18.73■□□□□ 0.59
PTCD3-220ENST00000627371 NME6O75414 186 aaPredicted RBP18.73■□□□□ 0.59
PTCD3-220ENST00000627371 ERN1O75460 977 aaKnown RBP18.73■□□□□ 0.59
PTCD3-220ENST00000627371 C6orf47O95873 294 aa18.73■□□□□ 0.59
PTCD3-220ENST00000627371 DRD5P21918 477 aa18.73■□□□□ 0.59
PTCD3-220ENST00000627371 NME2P22392 152 aa18.73■□□□□ 0.59
PTCD3-220ENST00000627371 IL12AP29459 219 aa18.73■□□□□ 0.59
PTCD3-220ENST00000627371 MRPL19P49406 292 aaKnown RBP18.73■□□□□ 0.59
PTCD3-220ENST00000627371 NRG3P56975 720 aa18.73■□□□□ 0.59
PTCD3-220ENST00000627371 ZNF155Q12901 538 aaPredicted RBP18.73■□□□□ 0.59
PTCD3-220ENST00000627371 NNATQ16517 81 aa18.73■□□□□ 0.59
PTCD3-220ENST00000627371 ZNF791Q3KP31 576 aaPredicted RBP18.73■□□□□ 0.59
PTCD3-220ENST00000627371 FAM174BQ3ZCQ3 159 aa18.73■□□□□ 0.59
PTCD3-220ENST00000627371 RTL4Q6ZR62 310 aa18.73■□□□□ 0.59
PTCD3-220ENST00000627371 MDGA2Q7Z553 956 aa18.73■□□□□ 0.59
PTCD3-220ENST00000627371 GOLM1Q8NBJ4 401 aa18.73■□□□□ 0.59
PTCD3-220ENST00000627371 RFWD2Q8NHY2 731 aa18.73■□□□□ 0.59
PTCD3-220ENST00000627371 HSPBAP1Q96EW2 488 aa18.73■□□□□ 0.59
PTCD3-220ENST00000627371 SGCZQ96LD1 299 aa18.73■□□□□ 0.59
PTCD3-220ENST00000627371 ZBTB18Q99592 522 aa18.73■□□□□ 0.59
PTCD3-220ENST00000627371 C3orf14Q9HBI5 128 aa18.73■□□□□ 0.59
PTCD3-220ENST00000627371 TIMMDC1Q9NPL8 285 aa18.73■□□□□ 0.59
PTCD3-220ENST00000627371 KLHL1Q9NR64 748 aa18.73■□□□□ 0.59
PTCD3-220ENST00000627371 DCTN4Q9UJW0 460 aa18.73■□□□□ 0.59
PTCD3-220ENST00000627371 TO15178 435 aa18.72■□□□□ 0.59
PTCD3-220ENST00000627371 EMC8O43402 210 aa18.72■□□□□ 0.59
PTCD3-220ENST00000627371 SLC28A2O43868 658 aa18.72■□□□□ 0.59
PTCD3-220ENST00000627371 SCN2BO60939 215 aa18.72■□□□□ 0.59
PTCD3-220ENST00000627371 VIMP08670 466 aaKnown RBP18.72■□□□□ 0.59
PTCD3-220ENST00000627371 CT45A8P0DMV1 189 aa18.72■□□□□ 0.59
PTCD3-220ENST00000627371 CT45A9P0DMV2 189 aa18.72■□□□□ 0.59
PTCD3-220ENST00000627371 ABCD3P28288 659 aa18.72■□□□□ 0.59
PTCD3-220ENST00000627371 S100A3P33764 101 aa18.72■□□□□ 0.59
PTCD3-220ENST00000627371 TMED10P49755 219 aaKnown RBP18.72■□□□□ 0.59
PTCD3-220ENST00000627371 MLLT10P55197 1068 aa18.72■□□□□ 0.59
PTCD3-220ENST00000627371 PHC1P78364 1004 aa18.72■□□□□ 0.59
PTCD3-220ENST00000627371 NTRK2Q16620 822 aa18.72■□□□□ 0.59
PTCD3-220ENST00000627371 MAPKAPK3Q16644 382 aa18.72■□□□□ 0.59
PTCD3-220ENST00000627371 PRR30Q53SZ7 412 aaPredicted RBP18.72■□□□□ 0.59
PTCD3-220ENST00000627371 CT45A2Q5DJT8 189 aa18.72■□□□□ 0.59
PTCD3-220ENST00000627371 ANXA8L1Q5VT79 327 aa18.72■□□□□ 0.59
PTCD3-220ENST00000627371 TMEM64Q6YI46 380 aa18.72■□□□□ 0.59
PTCD3-220ENST00000627371 GALNTL5Q7Z4T8 443 aa18.72■□□□□ 0.59
PTCD3-220ENST00000627371 MIER2Q8N344 545 aa18.72■□□□□ 0.59
PTCD3-220ENST00000627371 PSD4Q8NDX1 1056 aa18.72■□□□□ 0.59
PTCD3-220ENST00000627371 NUP43Q8NFH3 380 aa18.72■□□□□ 0.59
PTCD3-220ENST00000627371 FAM120BQ96EK7 910 aaKnown RBP18.72■□□□□ 0.59
PTCD3-220ENST00000627371 MS4A4EQ96PG1 132 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 84.6 ms