RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 THAP11Q96EK4 314 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 SH3YL1Q96HL8 342 aaPredicted RBP14.78□□□□□ -0.04
CPSF1-213ENST00000620219 OR7D2Q96RA2 312 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 ACTRT3Q9BYD9 372 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 NTN4Q9HB63 628 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 COPS7AQ9UBW8 275 aa14.78□□□□□ -0.04
CPSF1-213ENST00000620219 GPN3Q9UHW5 284 aaPredicted RBP14.78□□□□□ -0.04
CPSF1-213ENST00000620219 TLCD2A6NGC4 264 aa14.77□□□□□ -0.04
CPSF1-213ENST00000620219 PROM1O43490 865 aa14.77□□□□□ -0.04
CPSF1-213ENST00000620219 FCRL6Q6DN72 434 aa14.77□□□□□ -0.04
CPSF1-213ENST00000620219 SLC35F3Q8IY50 421 aa14.77□□□□□ -0.04
CPSF1-213ENST00000620219 ANKRD60Q9BZ19 345 aa14.77□□□□□ -0.04
CPSF1-213ENST00000620219 FAM192AQ9GZU8 254 aa14.77□□□□□ -0.04
CPSF1-213ENST00000620219 Q9N2J8 555 aa14.77□□□□□ -0.04
CPSF1-213ENST00000620219 RLIMQ9NVW2 624 aa14.77□□□□□ -0.04
CPSF1-213ENST00000620219 VNN3Q9NY84 501 aa14.77□□□□□ -0.04
CPSF1-213ENST00000620219 TPRKBQ9Y3C4 175 aa14.77□□□□□ -0.04
CPSF1-213ENST00000620219 IGHV5-51A0A0C4DH38 117 aa14.77□□□□□ -0.04
CPSF1-213ENST00000620219 CDC14CA4D256 554 aa14.77□□□□□ -0.04
CPSF1-213ENST00000620219 ARAFP10398 606 aa14.77□□□□□ -0.04
CPSF1-213ENST00000620219 AGXTP21549 392 aa14.77□□□□□ -0.04
CPSF1-213ENST00000620219 POU6F2P78424 691 aaPredicted RBP14.77□□□□□ -0.04
CPSF1-213ENST00000620219 OR51Q1Q8NH59 317 aa14.77□□□□□ -0.04
CPSF1-213ENST00000620219 MCHR1Q99705 422 aa14.77□□□□□ -0.04
CPSF1-213ENST00000620219 CTRCQ99895 268 aa14.77□□□□□ -0.04
CPSF1-213ENST00000620219 CUTCQ9NTM9 273 aa14.77□□□□□ -0.04
CPSF1-213ENST00000620219 POMT2Q9UKY4 750 aa14.77□□□□□ -0.04
CPSF1-213ENST00000620219 H3BNH8 94 aa14.77□□□□□ -0.05
CPSF1-213ENST00000620219 KHNYNO15037 678 aaKnown RBP14.77□□□□□ -0.05
CPSF1-213ENST00000620219 SRPX2O60687 465 aaPredicted RBP14.77□□□□□ -0.05
CPSF1-213ENST00000620219 IFNGR2P38484 337 aa14.77□□□□□ -0.05
CPSF1-213ENST00000620219 ZNF425Q6IV72 752 aa14.77□□□□□ -0.05
CPSF1-213ENST00000620219 VRK2Q86Y07 508 aa14.77□□□□□ -0.05
CPSF1-213ENST00000620219 SLC30A8Q8IWU4 369 aa14.77□□□□□ -0.05
CPSF1-213ENST00000620219 OR52R1Q8NGF1 315 aa14.77□□□□□ -0.05
CPSF1-213ENST00000620219 ZNF563Q8TA94 476 aa14.77□□□□□ -0.05
CPSF1-213ENST00000620219 ELP4Q96EB1 424 aa14.77□□□□□ -0.05
CPSF1-213ENST00000620219 FAM118AQ9NWS6 357 aa14.77□□□□□ -0.05
CPSF1-213ENST00000620219 CNOT11Q9UKZ1 510 aaKnown RBP14.77□□□□□ -0.05
CPSF1-213ENST00000620219 EXO1Q9UQ84 846 aaKnown RBP14.77□□□□□ -0.05
CPSF1-213ENST00000620219 ACOX3O15254 700 aa14.76□□□□□ -0.05
CPSF1-213ENST00000620219 SMARCD3Q6STE5 483 aa14.76□□□□□ -0.05
CPSF1-213ENST00000620219 PRR22Q8IZ63 422 aa14.76□□□□□ -0.05
CPSF1-213ENST00000620219 SLC5A8Q8N695 610 aa14.76□□□□□ -0.05
CPSF1-213ENST00000620219 NUDT22Q9BRQ3 303 aa14.76□□□□□ -0.05
CPSF1-213ENST00000620219 A0A0A6YYD5 115 aa14.76□□□□□ -0.05
CPSF1-213ENST00000620219 UGT2B11O75310 529 aa14.76□□□□□ -0.05
CPSF1-213ENST00000620219 CH25HO95992 272 aa14.76□□□□□ -0.05
CPSF1-213ENST00000620219 ALPLP05186 524 aa14.76□□□□□ -0.05
CPSF1-213ENST00000620219 BTG2P78543 158 aa14.76□□□□□ -0.05
CPSF1-213ENST00000620219 HLA-BQ31612 363 aa14.76□□□□□ -0.05
CPSF1-213ENST00000620219 GFM1Q96RP9 751 aaKnown RBP14.76□□□□□ -0.05
CPSF1-213ENST00000620219 TMEM27Q9HBJ8 222 aa14.76□□□□□ -0.05
CPSF1-213ENST00000620219 OLAHQ9NV23 265 aa14.76□□□□□ -0.05
CPSF1-213ENST00000620219 DNAJB6O75190 326 aa14.76□□□□□ -0.05
CPSF1-213ENST00000620219 TFAP2AP05549 437 aa14.76□□□□□ -0.05
CPSF1-213ENST00000620219 CENPAP49450 140 aa14.76□□□□□ -0.05
CPSF1-213ENST00000620219 MPEG1Q2M385 716 aa14.76□□□□□ -0.05
CPSF1-213ENST00000620219 CRB2Q5IJ48 1285 aa14.76□□□□□ -0.05
CPSF1-213ENST00000620219 ZFPM2Q8WW38 1151 aa14.76□□□□□ -0.05
CPSF1-213ENST00000620219 TBC1D20Q96BZ9 403 aa14.76□□□□□ -0.05
CPSF1-213ENST00000620219 NEURL3Q96EH8 262 aa14.76□□□□□ -0.05
CPSF1-213ENST00000620219 TVP23BQ9NYZ1 205 aa14.76□□□□□ -0.05
CPSF1-213ENST00000620219 SNRNP200O75643 2136 aaKnown RBP14.76□□□□□ -0.05
CPSF1-213ENST00000620219 MRPL19P49406 292 aaKnown RBP14.76□□□□□ -0.05
CPSF1-213ENST00000620219 ST13P50502 369 aaKnown RBP14.76□□□□□ -0.05
CPSF1-213ENST00000620219 RNF44Q7L0R7 432 aa14.76□□□□□ -0.05
CPSF1-213ENST00000620219 LSRQ86X29 649 aaPredicted RBP14.76□□□□□ -0.05
CPSF1-213ENST00000620219 RBM45Q8IUH3 476 aaKnown RBP14.76□□□□□ -0.05
CPSF1-213ENST00000620219 ATP6V1C2Q8NEY4 427 aa14.76□□□□□ -0.05
CPSF1-213ENST00000620219 MS4A4EQ96PG1 132 aa14.76□□□□□ -0.05
CPSF1-213ENST00000620219 PIP5K1AQ99755 562 aa14.76□□□□□ -0.05
CPSF1-213ENST00000620219 RARRES3Q9UL19 164 aa14.76□□□□□ -0.05
CPSF1-213ENST00000620219 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP14.76□□□□□ -0.055e-7■□□□□ 10.1
CPSF1-213ENST00000620219 PCDHGA8Q9Y5G5 932 aa14.76□□□□□ -0.05
CPSF1-213ENST00000620219 hCG_2014768A0A024R1R8 64 aa14.75□□□□□ -0.05
CPSF1-213ENST00000620219 TRBV5-3A0A0A0MS03 114 aa14.75□□□□□ -0.05
CPSF1-213ENST00000620219 COQ9O75208 318 aa14.75□□□□□ -0.05
CPSF1-213ENST00000620219 GKN3PP0CG01 181 aa14.75□□□□□ -0.05
CPSF1-213ENST00000620219 HOXB6P17509 224 aaKnown RBP14.75□□□□□ -0.05
CPSF1-213ENST00000620219 PTPN6P29350 595 aa14.75□□□□□ -0.05
CPSF1-213ENST00000620219 SSTR4P31391 388 aa14.75□□□□□ -0.05
CPSF1-213ENST00000620219 HSD11B2P80365 405 aa14.75□□□□□ -0.05
CPSF1-213ENST00000620219 RAPSNQ13702 412 aa14.75□□□□□ -0.05
CPSF1-213ENST00000620219 NR0B2Q15466 257 aa14.75□□□□□ -0.05
CPSF1-213ENST00000620219 ZIC1Q15915 447 aa14.75□□□□□ -0.05
CPSF1-213ENST00000620219 PRSS53Q2L4Q9 553 aa14.75□□□□□ -0.05
CPSF1-213ENST00000620219 GHDCQ8N2G8 530 aa14.75□□□□□ -0.05
CPSF1-213ENST00000620219 SUN3Q8TAQ9 357 aa14.75□□□□□ -0.05
CPSF1-213ENST00000620219 RORBQ92753 470 aa14.75□□□□□ -0.05
CPSF1-213ENST00000620219 MOAP1Q96BY2 351 aa14.75□□□□□ -0.05
CPSF1-213ENST00000620219 ZNF300Q96RE9 604 aaPredicted RBP14.75□□□□□ -0.05
CPSF1-213ENST00000620219 SPATA9Q9BWV2 254 aa14.75□□□□□ -0.05
CPSF1-213ENST00000620219 MAGIXQ9H6Y5 334 aa14.75□□□□□ -0.05
CPSF1-213ENST00000620219 ASB4Q9Y574 426 aa14.75□□□□□ -0.05
CPSF1-213ENST00000620219 VCANP13611 3396 aa14.75□□□□□ -0.05
CPSF1-213ENST00000620219 FADS2O95864 444 aaKnown RBP14.75□□□□□ -0.05
CPSF1-213ENST00000620219 ANXA8P13928 327 aa14.75□□□□□ -0.05
CPSF1-213ENST00000620219 POU3F3P20264 500 aaPredicted RBP14.75□□□□□ -0.05
CPSF1-213ENST00000620219 SLC36A3Q495N2 470 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms