RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 CMKLR1Q99788 373 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 EFHD1Q9BUP0 239 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 UGT2B28Q9BY64 529 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 VN1R1Q9GZP7 353 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 MAGIXQ9H6Y5 334 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 AKIRIN1Q9H9L7 192 aaPredicted RBP13.31□□□□□ -0.28
USP39-220ENST00000613444 ADAP2Q9NPF8 381 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 AGPAT4Q9NRZ5 378 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 P2RX2Q9UBL9 471 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 ANGPT4Q9Y264 503 aa13.31□□□□□ -0.28
USP39-220ENST00000613444 TCRBV16S1A1N1A0A5B0 115 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 M0QX08 132 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 CPNE3O75131 537 aaKnown RBP13.3□□□□□ -0.28
USP39-220ENST00000613444 MT-ND1P03886 318 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 ACP2P11117 423 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 ITIH1P19827 911 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 ETV5P41161 510 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 FUT7Q11130 342 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 CYBRD1Q53TN4 286 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 HEPHL1Q6MZM0 1159 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 VTCN1Q7Z7D3 282 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 METTL25Q8N6Q8 603 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 OR52R1Q8NGF1 315 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 STT3BQ8TCJ2 826 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 PTPMT1Q8WUK0 201 aaPredicted RBP13.3□□□□□ -0.28
USP39-220ENST00000613444 POP5Q969H6 163 aaKnown RBP13.3□□□□□ -0.28
USP39-220ENST00000613444 SLC47A1Q96FL8 570 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 TREX2Q9BQ50 279 aaPredicted RBP13.3□□□□□ -0.28
USP39-220ENST00000613444 PELOQ9BRX2 385 aaKnown RBP13.3□□□□□ -0.28
USP39-220ENST00000613444 RPS6KA6Q9UK32 745 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 ZNF451Q9Y4E5 1061 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 A0A1W2PNU3 283 aaPredicted RBP13.3□□□□□ -0.28
USP39-220ENST00000613444 PMS2P1A4D2B8 440 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 VSTM2BA6NLU5 285 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 MEN1O00255 615 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 TPST1O60507 370 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 CNOT3O75175 753 aaKnown RBP13.3□□□□□ -0.28
USP39-220ENST00000613444 ZNF682O95780 498 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 OPN1SWP03999 348 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 CLPSP04118 112 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 CHRM4P08173 479 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 ZGLP1P0C6A0 271 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 SSTR4P31391 388 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 EMDP50402 254 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 ANXA11P50995 505 aaKnown RBP13.3□□□□□ -0.28
USP39-220ENST00000613444 MAPK10P53779 464 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 CHRNB3Q05901 458 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 ELOAQ14241 798 aaKnown RBP13.3□□□□□ -0.28
USP39-220ENST00000613444 TRIP6Q15654 476 aaKnown RBP13.3□□□□□ -0.28
USP39-220ENST00000613444 DUSP5Q16690 384 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 FAM98BQ52LJ0 330 aaKnown RBP13.3□□□□□ -0.28
USP39-220ENST00000613444 ZCCHC12Q6PEW1 402 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 OLIG3Q7RTU3 272 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 OVCH1Q7RTY7 1134 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 SLC44A2Q8IWA5 706 aaPredicted RBP13.3□□□□□ -0.28
USP39-220ENST00000613444 PLPP5Q8NEB5 264 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 LRFN5Q96NI6 719 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 BCL2L10Q9HD36 194 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 SLC39A1Q9NY26 324 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 LOXL2Q9Y4K0 774 aa13.3□□□□□ -0.28
USP39-220ENST00000613444 SLC28A2O43868 658 aa13.29□□□□□ -0.28
USP39-220ENST00000613444 FOXD2O60548 495 aaPredicted RBP13.29□□□□□ -0.28
USP39-220ENST00000613444 DKK1O94907 266 aa13.29□□□□□ -0.28
USP39-220ENST00000613444 ZIC2O95409 532 aaPredicted RBP13.29□□□□□ -0.28
USP39-220ENST00000613444 PEX2P28328 305 aa13.29□□□□□ -0.28
USP39-220ENST00000613444 MAGEA2P43356 314 aa13.29□□□□□ -0.28
USP39-220ENST00000613444 SELENOWP63302 87 aa13.29□□□□□ -0.28
USP39-220ENST00000613444 OGFRL1Q5TC84 451 aaPredicted RBP13.29□□□□□ -0.28
USP39-220ENST00000613444 MFSD4BQ5TF39 518 aa13.29□□□□□ -0.28
USP39-220ENST00000613444 LPCAT4Q643R3 524 aa13.29□□□□□ -0.28
USP39-220ENST00000613444 AMIGO2Q86SJ2 522 aa13.29□□□□□ -0.28
USP39-220ENST00000613444 SLCO6A1Q86UG4 719 aa13.29□□□□□ -0.28
USP39-220ENST00000613444 PRSS58Q8IYP2 241 aa13.29□□□□□ -0.28
USP39-220ENST00000613444 ADAMTS15Q8TE58 950 aa13.29□□□□□ -0.28
USP39-220ENST00000613444 LIN37Q96GY3 246 aaPredicted RBP13.29□□□□□ -0.28
USP39-220ENST00000613444 HSH2DQ96JZ2 352 aa13.29□□□□□ -0.28
USP39-220ENST00000613444 SLC26A1Q9H2B4 701 aa13.29□□□□□ -0.28
USP39-220ENST00000613444 GIN1Q9NXP7 522 aa13.29□□□□□ -0.28
USP39-220ENST00000613444 MKL2Q9ULH7 1088 aa13.29□□□□□ -0.28
USP39-220ENST00000613444 GVINP1Q7Z2Y8 2422 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 DUXAA6NLW8 204 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 C5orf58C9J3I9 102 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 MFN2O95140 757 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 NR2F1P10589 423 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 KCNJ10P78508 379 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 ZNF267Q14586 743 aaPredicted RBP13.28□□□□□ -0.28
USP39-220ENST00000613444 IQCCQ4KMZ1 466 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 MRPL14Q6P1L8 145 aaKnown RBP13.28□□□□□ -0.28
USP39-220ENST00000613444 DHRS13Q6UX07 377 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 ZNF517Q6ZMY9 492 aaPredicted RBP13.28□□□□□ -0.28
USP39-220ENST00000613444 PATL1Q86TB9 770 aaKnown RBP13.28□□□□□ -0.28
USP39-220ENST00000613444 ZNF615Q8N8J6 731 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 CDRT4Q8N9R6 151 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 CDS1Q92903 461 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 ZNF578Q96N58 590 aaPredicted RBP13.28□□□□□ -0.28
USP39-220ENST00000613444 DOHHQ9BU89 302 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 STRADBQ9C0K7 418 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 SEMA6AQ9H2E6 1030 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 PIGUQ9H490 435 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 ERVK-19Q9WJR5 959 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms