RNA–Protein interactions for RNA: ENST00000600026.5

LTBP4-227, Transcript of latent transforming growth factor beta binding protein 4, human

TSL 3

Gene LTBP4, Length 723 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LTBP4-227	ENST00000600026	ERVH48-1	M5A8F1	160 aa		20.4	■□□□□ 0.86
LTBP4-227	ENST00000600026	HRK	O00198	91 aa		20.4	■□□□□ 0.86
LTBP4-227	ENST00000600026	PLOD3	O60568	738 aa		20.4	■□□□□ 0.86
LTBP4-227	ENST00000600026	BCAS2	O75934	225 aa	Predicted RBP	20.4	■□□□□ 0.86
LTBP4-227	ENST00000600026	CT62	P0C5K7	136 aa		20.4	■□□□□ 0.86
LTBP4-227	ENST00000600026	FAM87A	P0C7U9	286 aa		20.4	■□□□□ 0.86
LTBP4-227	ENST00000600026	CHI3L1	P36222	383 aa	Predicted RBP	20.4	■□□□□ 0.86
LTBP4-227	ENST00000600026	MC3R	P41968	323 aa		20.4	■□□□□ 0.86
LTBP4-227	ENST00000600026	MRPS35	P82673	323 aa	Known RBP	20.4	■□□□□ 0.86
LTBP4-227	ENST00000600026	MYBPC3	Q14896	1274 aa		20.4	■□□□□ 0.86
LTBP4-227	ENST00000600026	JMJD6	Q6NYC1	403 aa	Predicted RBP	20.4	■□□□□ 0.86
LTBP4-227	ENST00000600026	DLEU7	Q6UYE1	221 aa		20.4	■□□□□ 0.86
LTBP4-227	ENST00000600026	SZRD1	Q7Z422	152 aa		20.4	■□□□□ 0.86
LTBP4-227	ENST00000600026	MGA	Q8IWI9	3026 aa		20.4	■□□□□ 0.86
LTBP4-227	ENST00000600026	OR56A1	Q8NGH5	318 aa		20.4	■□□□□ 0.86
LTBP4-227	ENST00000600026	OR1N1	Q8NGS0	311 aa		20.4	■□□□□ 0.86
LTBP4-227	ENST00000600026	FBXL20	Q96IG2	436 aa		20.4	■□□□□ 0.86
LTBP4-227	ENST00000600026	MAGED4	Q96JG8	741 aa		20.4	■□□□□ 0.86
LTBP4-227	ENST00000600026	PHF12	Q96QT6	1004 aa		20.4	■□□□□ 0.86
LTBP4-227	ENST00000600026	CGREF1	Q99674	301 aa		20.4	■□□□□ 0.86
LTBP4-227	ENST00000600026	CNPPD1	Q9BV87	410 aa		20.4	■□□□□ 0.86
LTBP4-227	ENST00000600026	NUDT9	Q9BW91	350 aa		20.4	■□□□□ 0.86
LTBP4-227	ENST00000600026	SLAMF8	Q9P0V8	285 aa		20.4	■□□□□ 0.86
LTBP4-227	ENST00000600026	ZNF223	Q9UK11	482 aa	Predicted RBP	20.4	■□□□□ 0.86
LTBP4-227	ENST00000600026	ERVK-19	Q9WJR5	959 aa		20.4	■□□□□ 0.86
LTBP4-227	ENST00000600026	PCDHB14	Q9Y5E9	798 aa		20.4	■□□□□ 0.86
LTBP4-227	ENST00000600026	SETX	Q7Z333	2677 aa	Known RBP	20.4	■□□□□ 0.86
LTBP4-227	ENST00000600026	RNF103-CHMP3	A0A140T963	221 aa		20.39	■□□□□ 0.85
LTBP4-227	ENST00000600026	PPIB	P23284	216 aa	Known RBP	20.39	■□□□□ 0.85
LTBP4-227	ENST00000600026	RASSF2	P50749	326 aa		20.39	■□□□□ 0.85
LTBP4-227	ENST00000600026	CLCN2	P51788	898 aa		20.39	■□□□□ 0.85
LTBP4-227	ENST00000600026	MGAT2	Q10469	447 aa		20.39	■□□□□ 0.85
LTBP4-227	ENST00000600026	KCNAB2	Q13303	367 aa		20.39	■□□□□ 0.85
LTBP4-227	ENST00000600026	TRMT12	Q53H54	448 aa	Known RBP	20.39	■□□□□ 0.85
LTBP4-227	ENST00000600026	OR7G2	Q8NG99	324 aa		20.39	■□□□□ 0.85
LTBP4-227	ENST00000600026	ZNF721	Q8TF20	911 aa		20.39	■□□□□ 0.85
LTBP4-227	ENST00000600026	PSMF1	Q92530	271 aa		20.39	■□□□□ 0.85
LTBP4-227	ENST00000600026	CTHRC1	Q96CG8	243 aa		20.39	■□□□□ 0.85
LTBP4-227	ENST00000600026	LRRC58	Q96CX6	371 aa		20.39	■□□□□ 0.85
LTBP4-227	ENST00000600026	FAM120B	Q96EK7	910 aa	Known RBP	20.39	■□□□□ 0.85
LTBP4-227	ENST00000600026	HOPX	Q9BPY8	73 aa	Predicted RBP	20.39	■□□□□ 0.85
LTBP4-227	ENST00000600026	SLC35A5	Q9BS91	424 aa		20.39	■□□□□ 0.85
LTBP4-227	ENST00000600026	SEMA4C	Q9C0C4	833 aa		20.39	■□□□□ 0.85
LTBP4-227	ENST00000600026	ZNF552	Q9H707	407 aa	Predicted RBP	20.39	■□□□□ 0.85
LTBP4-227	ENST00000600026	ZCCHC3	Q9NUD5	404 aa	Known RBP	20.39	■□□□□ 0.85
LTBP4-227	ENST00000600026	SDAD1	Q9NVU7	687 aa	Known RBP eCLIP	20.39	■□□□□ 0.85	1e-7	■□□□□ 9.8
LTBP4-227	ENST00000600026	COPS7A	Q9UBW8	275 aa		20.39	■□□□□ 0.85
LTBP4-227	ENST00000600026	BCAP29	Q9UHQ4	241 aa		20.39	■□□□□ 0.85
LTBP4-227	ENST00000600026	C19orf53	Q9UNZ5	99 aa	Predicted RBP	20.39	■□□□□ 0.85
LTBP4-227	ENST00000600026	ERVK-11	Q9UQG0	969 aa		20.39	■□□□□ 0.85
LTBP4-227	ENST00000600026	TRBV11-1	A0A0K0K1C0	115 aa		20.38	■□□□□ 0.85
LTBP4-227	ENST00000600026	MKRN2OS	H3BPM6	223 aa		20.38	■□□□□ 0.85
LTBP4-227	ENST00000600026	COQ9	O75208	318 aa		20.38	■□□□□ 0.85
LTBP4-227	ENST00000600026	UNC5C	O95185	931 aa		20.38	■□□□□ 0.85
LTBP4-227	ENST00000600026	KRT75	O95678	551 aa		20.38	■□□□□ 0.85
LTBP4-227	ENST00000600026	IGKV3-11	P04433	115 aa		20.38	■□□□□ 0.85
LTBP4-227	ENST00000600026	FUT7	Q11130	342 aa		20.38	■□□□□ 0.85
LTBP4-227	ENST00000600026	TP53BP2	Q13625	1128 aa		20.38	■□□□□ 0.85
LTBP4-227	ENST00000600026	GTDC1	Q4AE62	458 aa		20.38	■□□□□ 0.85
LTBP4-227	ENST00000600026	C16orf89	Q6UX73	402 aa		20.38	■□□□□ 0.85
LTBP4-227	ENST00000600026	OR2L13	Q8N349	312 aa		20.38	■□□□□ 0.85
LTBP4-227	ENST00000600026	SIRT6	Q8N6T7	355 aa		20.38	■□□□□ 0.85
LTBP4-227	ENST00000600026	NUP43	Q8NFH3	380 aa		20.38	■□□□□ 0.85
LTBP4-227	ENST00000600026	OR7G1	Q8NGA0	311 aa		20.38	■□□□□ 0.85
LTBP4-227	ENST00000600026	OR5AK3P	Q8NH89	298 aa		20.38	■□□□□ 0.85
LTBP4-227	ENST00000600026	SENP5	Q96HI0	755 aa	Predicted RBP	20.38	■□□□□ 0.85
LTBP4-227	ENST00000600026	SH3GL1	Q99961	368 aa		20.38	■□□□□ 0.85
LTBP4-227	ENST00000600026	TRIM4	Q9C037	500 aa		20.38	■□□□□ 0.85
LTBP4-227	ENST00000600026	RAD21L1	Q9H4I0	556 aa		20.38	■□□□□ 0.85
LTBP4-227	ENST00000600026	SLC6A13	Q9NSD5	602 aa		20.38	■□□□□ 0.85
LTBP4-227	ENST00000600026	VAPA	Q9P0L0	249 aa		20.38	■□□□□ 0.85
LTBP4-227	ENST00000600026	ZNF639	Q9UID6	485 aa		20.38	■□□□□ 0.85
LTBP4-227	ENST00000600026	PCDHGA9	Q9Y5G4	932 aa	Known RBP	20.38	■□□□□ 0.85
LTBP4-227	ENST00000600026	GCN1	Q92616	2671 aa	Known RBP	20.37	■□□□□ 0.85
LTBP4-227	ENST00000600026	C15orf38-AP3S2	A0A0A6YYH1	394 aa		20.37	■□□□□ 0.85
LTBP4-227	ENST00000600026	EVPLL	A8MZ36	301 aa		20.37	■□□□□ 0.85
LTBP4-227	ENST00000600026	UPK1A	O00322	258 aa		20.37	■□□□□ 0.85
LTBP4-227	ENST00000600026	RRP9	O43818	475 aa	Known RBP	20.37	■□□□□ 0.85
LTBP4-227	ENST00000600026	CLPS	P04118	112 aa		20.37	■□□□□ 0.85
LTBP4-227	ENST00000600026	PTPN6	P29350	595 aa		20.37	■□□□□ 0.85
LTBP4-227	ENST00000600026	SOX18	P35713	384 aa		20.37	■□□□□ 0.85
LTBP4-227	ENST00000600026	SOX11	P35716	441 aa		20.37	■□□□□ 0.85
LTBP4-227	ENST00000600026	PRKAG1	P54619	331 aa		20.37	■□□□□ 0.85
LTBP4-227	ENST00000600026	GAB1	Q13480	694 aa		20.37	■□□□□ 0.85
LTBP4-227	ENST00000600026	CAPRIN1	Q14444	709 aa	Known RBP	20.37	■□□□□ 0.85
LTBP4-227	ENST00000600026	RUNDC3A	Q59EK9	446 aa		20.37	■□□□□ 0.85
LTBP4-227	ENST00000600026	FHL5	Q5TD97	284 aa		20.37	■□□□□ 0.85
LTBP4-227	ENST00000600026	B3GNTL1	Q67FW5	361 aa	Predicted RBP	20.37	■□□□□ 0.85
LTBP4-227	ENST00000600026	PCSK4	Q6UW60	755 aa		20.37	■□□□□ 0.85
LTBP4-227	ENST00000600026	ANGPTL8	Q6UXH0	198 aa		20.37	■□□□□ 0.85
LTBP4-227	ENST00000600026	C6orf120	Q7Z4R8	191 aa		20.37	■□□□□ 0.85
LTBP4-227	ENST00000600026	ARPIN	Q7Z6K5	226 aa		20.37	■□□□□ 0.85
LTBP4-227	ENST00000600026	EXD3	Q8N9H8	876 aa		20.37	■□□□□ 0.85
LTBP4-227	ENST00000600026	ZFP90	Q8TF47	636 aa		20.37	■□□□□ 0.85
LTBP4-227	ENST00000600026	ANKRD27	Q96NW4	1050 aa		20.37	■□□□□ 0.85
LTBP4-227	ENST00000600026	ADNP	Q9H2P0	1102 aa		20.37	■□□□□ 0.85
LTBP4-227	ENST00000600026	TPT1P8	Q9HAU6	139 aa		20.37	■□□□□ 0.85
LTBP4-227	ENST00000600026	NTM	Q9P121	344 aa		20.37	■□□□□ 0.85
LTBP4-227	ENST00000600026	CORO2B	Q9UQ03	480 aa		20.37	■□□□□ 0.85
LTBP4-227	ENST00000600026	CFL2	Q9Y281	166 aa		20.37	■□□□□ 0.85

Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms