RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-208ENST00000595726 ZBED6CLQ96FA7 236 aaPredicted RBP12.47□□□□□ -0.41
SHKBP1-208ENST00000595726 F2RL3Q96RI0 385 aa12.47□□□□□ -0.41
SHKBP1-208ENST00000595726 EFCAB11Q9BUY7 163 aa12.47□□□□□ -0.41
SHKBP1-208ENST00000595726 ANGPTL4Q9BY76 406 aa12.47□□□□□ -0.41
SHKBP1-208ENST00000595726 REXO4Q9GZR2 422 aaKnown RBP12.47□□□□□ -0.41
SHKBP1-208ENST00000595726 OPN3Q9H1Y3 402 aaPredicted RBP12.47□□□□□ -0.41
SHKBP1-208ENST00000595726 VPS11Q9H270 941 aa12.47□□□□□ -0.41
SHKBP1-208ENST00000595726 CXorf56Q9H5V9 222 aa12.47□□□□□ -0.41
SHKBP1-208ENST00000595726 PRDM7Q9NQW5 492 aa12.47□□□□□ -0.41
SHKBP1-208ENST00000595726 TEX10Q9NXF1 929 aaPredicted RBP12.47□□□□□ -0.41
SHKBP1-208ENST00000595726 OPTCQ9UBM4 332 aa12.47□□□□□ -0.41
SHKBP1-208ENST00000595726 ZNF180Q9UJW8 692 aa12.47□□□□□ -0.41
SHKBP1-208ENST00000595726 IKBKGQ9Y6K9 419 aa12.47□□□□□ -0.41
SHKBP1-208ENST00000595726 MED12LQ86YW9 2145 aa12.47□□□□□ -0.41
SHKBP1-208ENST00000595726 A0A088AWK7 358 aa12.46□□□□□ -0.41
SHKBP1-208ENST00000595726 C2orf72A6NCS6 295 aa12.46□□□□□ -0.41
SHKBP1-208ENST00000595726 SYNDIG1LA6NDD5 238 aa12.46□□□□□ -0.41
SHKBP1-208ENST00000595726 H0Y3Z8 333 aa12.46□□□□□ -0.41
SHKBP1-208ENST00000595726 K7EPI3 171 aa12.46□□□□□ -0.41
SHKBP1-208ENST00000595726 MSTNO14793 375 aa12.46□□□□□ -0.41
SHKBP1-208ENST00000595726 FGF17O60258 216 aa12.46□□□□□ -0.41
SHKBP1-208ENST00000595726 CLEC3AO75596 197 aa12.46□□□□□ -0.41
SHKBP1-208ENST00000595726 TGM6O95932 706 aa12.46□□□□□ -0.41
SHKBP1-208ENST00000595726 ABHD2P08910 425 aa12.46□□□□□ -0.41
SHKBP1-208ENST00000595726 ZNF10P21506 573 aaPredicted RBP12.46□□□□□ -0.41
SHKBP1-208ENST00000595726 UGT2B10P36537 528 aa12.46□□□□□ -0.41
SHKBP1-208ENST00000595726 CASP2P42575 452 aa12.46□□□□□ -0.41
SHKBP1-208ENST00000595726 IRF8Q02556 426 aa12.46□□□□□ -0.41
SHKBP1-208ENST00000595726 CHIT1Q13231 466 aa12.46□□□□□ -0.41
SHKBP1-208ENST00000595726 TBCCQ15814 346 aa12.46□□□□□ -0.41
SHKBP1-208ENST00000595726 ADPRMQ3LIE5 342 aa12.46□□□□□ -0.41
SHKBP1-208ENST00000595726 TECRLQ5HYJ1 363 aa12.46□□□□□ -0.41
SHKBP1-208ENST00000595726 TBCELQ5QJ74 424 aa12.46□□□□□ -0.41
SHKBP1-208ENST00000595726 KLC3Q6P597 504 aa12.46□□□□□ -0.41
SHKBP1-208ENST00000595726 TRIM40Q6P9F5 258 aa12.46□□□□□ -0.41
SHKBP1-208ENST00000595726 VWA1Q6PCB0 445 aa12.46□□□□□ -0.41
SHKBP1-208ENST00000595726 BTLAQ7Z6A9 289 aa12.46□□□□□ -0.41
SHKBP1-208ENST00000595726 UBE3DQ7Z6J8 389 aa12.46□□□□□ -0.41
SHKBP1-208ENST00000595726 PACS2Q86VP3 889 aa12.46□□□□□ -0.41
SHKBP1-208ENST00000595726 ZFP3Q96NJ6 502 aa12.46□□□□□ -0.41
SHKBP1-208ENST00000595726 DGAT2Q96PD7 388 aa12.46□□□□□ -0.41
SHKBP1-208ENST00000595726 WWTR1Q9GZV5 400 aa12.46□□□□□ -0.41
SHKBP1-208ENST00000595726 COPS7BQ9H9Q2 264 aaPredicted RBP12.46□□□□□ -0.41
SHKBP1-208ENST00000595726 ZNF490Q9ULM2 529 aaPredicted RBP12.46□□□□□ -0.41
SHKBP1-208ENST00000595726 EXOC1LA0A1B0GW35 172 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 ANKDD1BA6NHY2 528 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 WASHC1A8K0Z3 465 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 TRIM49D1C9J1S8 452 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 RTCAO00442 366 aaKnown RBP12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 RIPK2O43353 540 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 GPRIN2O60269 458 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 SNX4O95219 450 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 ACTL6AO96019 429 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 FAM153BP0C7A2 387 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 GFAPP14136 432 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 COX7A2P14406 83 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 CNTFP26441 200 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 GCAP28676 217 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 PTPN6P29350 595 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 CASP3P42574 277 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 STT3AP46977 705 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 ALDH18A1P54886 795 aaKnown RBP12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 HERVK_113P63132 956 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 ERVK-8P63133 956 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 PCDH1Q08174 1060 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 GAB1Q13480 694 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 LAPTM5Q13571 262 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 ZNF267Q14586 743 aaPredicted RBP12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 PFKFB4Q16877 469 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 FAM153CQ494X1 144 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 PAGE2BQ5JRK9 111 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 ZNF793Q6ZN11 406 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 TRMT10CQ7L0Y3 403 aaKnown RBP12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 SLC29A4Q7RTT9 530 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 TRIM42Q8IWZ5 723 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 GSPT2Q8IYD1 628 aaKnown RBP12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 DND1Q8IYX4 353 aaKnown RBP12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 CNEP1R1Q8N9A8 125 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 RDH11Q8TC12 318 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 SPPL2AQ8TCT8 520 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 FBXL20Q96IG2 436 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 ERVK-6Q9BXR3 956 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 TXLNGYQ9BZA5 131 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 L2HGDHQ9H9P8 463 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 CLCF1Q9UBD9 225 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 LAMP3Q9UQV4 416 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 ERVK-19Q9WJR5 959 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 DTX4Q9Y2E6 619 aa12.45□□□□□ -0.42
SHKBP1-208ENST00000595726 IQANK1A0A1B0GTG1 560 aa12.44□□□□□ -0.42
SHKBP1-208ENST00000595726 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.44□□□□□ -0.42
SHKBP1-208ENST00000595726 LRRC14BA6NHZ5 514 aa12.44□□□□□ -0.42
SHKBP1-208ENST00000595726 C16orf97H3BN30 126 aa12.44□□□□□ -0.42
SHKBP1-208ENST00000595726 TP53I11O14683 189 aa12.44□□□□□ -0.42
SHKBP1-208ENST00000595726 KLF4O43474 513 aa12.44□□□□□ -0.42
SHKBP1-208ENST00000595726 SH3BGRLO75368 114 aa12.44□□□□□ -0.42
SHKBP1-208ENST00000595726 THBDP07204 575 aa12.44□□□□□ -0.42
SHKBP1-208ENST00000595726 EPB42P16452 691 aa12.44□□□□□ -0.42
SHKBP1-208ENST00000595726 ACVR1BP36896 505 aa12.44□□□□□ -0.42
SHKBP1-208ENST00000595726 RCN2Q14257 317 aa12.44□□□□□ -0.42
SHKBP1-208ENST00000595726 EBPQ15125 230 aaKnown RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms