RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 OR52R1Q8NGF1 315 aa13.89□□□□□ -0.19
TRIM28-205ENST00000595028 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.89□□□□□ -0.19
TRIM28-205ENST00000595028 FAM57AQ8TBR7 257 aa13.89□□□□□ -0.19
TRIM28-205ENST00000595028 ITLN2Q8WWU7 325 aaPredicted RBP13.89□□□□□ -0.19
TRIM28-205ENST00000595028 ERP27Q96DN0 273 aa13.89□□□□□ -0.19
TRIM28-205ENST00000595028 DEFB127Q9H1M4 99 aa13.89□□□□□ -0.19
TRIM28-205ENST00000595028 TUBB1Q9H4B7 451 aa13.89□□□□□ -0.19
TRIM28-205ENST00000595028 ZNF703Q9H7S9 590 aaPredicted RBP13.89□□□□□ -0.19
TRIM28-205ENST00000595028 LRTM1Q9HBL6 345 aa13.89□□□□□ -0.19
TRIM28-205ENST00000595028 PROK2Q9HC23 129 aa13.89□□□□□ -0.19
TRIM28-205ENST00000595028 MIEF1Q9NQG6 463 aa13.89□□□□□ -0.19
TRIM28-205ENST00000595028 PRODH2Q9UF12 536 aa13.89□□□□□ -0.19
TRIM28-205ENST00000595028 BOKQ9UMX3 212 aaPredicted RBP13.89□□□□□ -0.19
TRIM28-205ENST00000595028 WBP11Q9Y2W2 641 aaKnown RBP13.89□□□□□ -0.19
TRIM28-205ENST00000595028 MEMO1Q9Y316 297 aa13.89□□□□□ -0.19
TRIM28-205ENST00000595028 NPFFR2Q9Y5X5 522 aa13.89□□□□□ -0.19
TRIM28-205ENST00000595028 LIPGQ9Y5X9 500 aa13.89□□□□□ -0.19
TRIM28-205ENST00000595028 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.89□□□□□ -0.19
TRIM28-205ENST00000595028 LRRC3CA6NJW4 275 aa13.88□□□□□ -0.19
TRIM28-205ENST00000595028 TMEM233B4DJY2 109 aa13.88□□□□□ -0.19
TRIM28-205ENST00000595028 SLC28A1O00337 649 aa13.88□□□□□ -0.19
TRIM28-205ENST00000595028 RGS16O15492 202 aaPredicted RBP13.88□□□□□ -0.19
TRIM28-205ENST00000595028 RGS14O43566 566 aa13.88□□□□□ -0.19
TRIM28-205ENST00000595028 LRATO95237 230 aa13.88□□□□□ -0.19
TRIM28-205ENST00000595028 CHEK2O96017 543 aa13.88□□□□□ -0.19
TRIM28-205ENST00000595028 IGHG3P01860 377 aa13.88□□□□□ -0.19
TRIM28-205ENST00000595028 TUBBP07437 444 aa13.88□□□□□ -0.19
TRIM28-205ENST00000595028 ESRRAP11474 423 aaPredicted RBP13.88□□□□□ -0.19
TRIM28-205ENST00000595028 ABCD3P28288 659 aa13.88□□□□□ -0.19
TRIM28-205ENST00000595028 SERPINB5P36952 375 aa13.88□□□□□ -0.19
TRIM28-205ENST00000595028 ETV4P43268 484 aa13.88□□□□□ -0.19
TRIM28-205ENST00000595028 ADORA2A-AS1P86434 159 aa13.88□□□□□ -0.19
TRIM28-205ENST00000595028 C2orf80Q0P641 193 aa13.88□□□□□ -0.19
TRIM28-205ENST00000595028 KIAA0040Q15053 153 aa13.88□□□□□ -0.19
TRIM28-205ENST00000595028 ARL13AQ5H913 290 aaPredicted RBP13.88□□□□□ -0.19
TRIM28-205ENST00000595028 TBCELQ5QJ74 424 aa13.88□□□□□ -0.19
TRIM28-205ENST00000595028 NOXRED1Q6NXP6 359 aa13.88□□□□□ -0.19
TRIM28-205ENST00000595028 PAOXQ6QHF9 649 aa13.88□□□□□ -0.19
TRIM28-205ENST00000595028 ZCCHC23Q6ZST2 131 aa13.88□□□□□ -0.19
TRIM28-205ENST00000595028 DOLPP1Q86YN1 238 aa13.88□□□□□ -0.19
TRIM28-205ENST00000595028 CCDC116Q8IYX3 515 aa13.88□□□□□ -0.19
TRIM28-205ENST00000595028 PRR22Q8IZ63 422 aa13.88□□□□□ -0.19
TRIM28-205ENST00000595028 FAM9CQ8IZT9 166 aa13.88□□□□□ -0.19
TRIM28-205ENST00000595028 ZNF808Q8N4W9 903 aaPredicted RBP13.88□□□□□ -0.19
TRIM28-205ENST00000595028 OR5M3Q8NGP4 307 aa13.88□□□□□ -0.19
TRIM28-205ENST00000595028 OR2T11Q8NH01 316 aa13.88□□□□□ -0.19
TRIM28-205ENST00000595028 DIO2Q92813 273 aa13.88□□□□□ -0.19
TRIM28-205ENST00000595028 FCRL1Q96LA6 429 aa13.88□□□□□ -0.19
TRIM28-205ENST00000595028 SECISBP2Q96T21 854 aaKnown RBP13.88□□□□□ -0.19
TRIM28-205ENST00000595028 EML4Q9HC35 981 aaKnown RBP13.88□□□□□ -0.19
TRIM28-205ENST00000595028 C1orf109Q9NX04 203 aa13.88□□□□□ -0.19
TRIM28-205ENST00000595028 DNAJC15Q9Y5T4 150 aa13.88□□□□□ -0.19
TRIM28-205ENST00000595028 ANKRD33BA6NCL7 494 aa13.87□□□□□ -0.19
TRIM28-205ENST00000595028 MYO1GB0I1T2 1018 aa13.87□□□□□ -0.19
TRIM28-205ENST00000595028 ACOX3O15254 700 aa13.87□□□□□ -0.19
TRIM28-205ENST00000595028 SEC22BO75396 215 aa13.87□□□□□ -0.19
TRIM28-205ENST00000595028 PPM1BO75688 479 aa13.87□□□□□ -0.19
TRIM28-205ENST00000595028 PDE9AO76083 593 aa13.87□□□□□ -0.19
TRIM28-205ENST00000595028 TPOP07202 933 aa13.87□□□□□ -0.19
TRIM28-205ENST00000595028 BPGMP07738 259 aa13.87□□□□□ -0.19
TRIM28-205ENST00000595028 FGF4P08620 206 aa13.87□□□□□ -0.19
TRIM28-205ENST00000595028 CELA3AP09093 270 aa13.87□□□□□ -0.19
TRIM28-205ENST00000595028 EMDP50402 254 aa13.87□□□□□ -0.19
TRIM28-205ENST00000595028 DCAF7P61962 342 aa13.87□□□□□ -0.19
TRIM28-205ENST00000595028 RPL38P63173 70 aaKnown RBP13.87□□□□□ -0.19
TRIM28-205ENST00000595028 PRSS53Q2L4Q9 553 aa13.87□□□□□ -0.19
TRIM28-205ENST00000595028 Q6ZSR9 355 aa13.87□□□□□ -0.19
TRIM28-205ENST00000595028 MRGPRGQ86SM5 289 aa13.87□□□□□ -0.19
TRIM28-205ENST00000595028 HOMEZQ8IX15 550 aa13.87□□□□□ -0.19
TRIM28-205ENST00000595028 EID3Q8N140 333 aa13.87□□□□□ -0.19
TRIM28-205ENST00000595028 SPPL2AQ8TCT8 520 aa13.87□□□□□ -0.19
TRIM28-205ENST00000595028 PHF10Q8WUB8 498 aaKnown RBP13.87□□□□□ -0.19
TRIM28-205ENST00000595028 TWIST2Q8WVJ9 160 aa13.87□□□□□ -0.19
TRIM28-205ENST00000595028 KAT2AQ92830 837 aa13.87□□□□□ -0.19
TRIM28-205ENST00000595028 HSPBAP1Q96EW2 488 aa13.87□□□□□ -0.19
TRIM28-205ENST00000595028 LCORQ96JN0 433 aaPredicted RBP13.87□□□□□ -0.19
TRIM28-205ENST00000595028 ZNF597Q96LX8 424 aa13.87□□□□□ -0.19
TRIM28-205ENST00000595028 BBS4Q96RK4 519 aa13.87□□□□□ -0.19
TRIM28-205ENST00000595028 CCT7Q99832 543 aa13.87□□□□□ -0.19
TRIM28-205ENST00000595028 DOHHQ9BU89 302 aa13.87□□□□□ -0.19
TRIM28-205ENST00000595028 ZFP64Q9NPA5 681 aa13.87□□□□□ -0.19
TRIM28-205ENST00000595028 TAS2R7Q9NYW3 318 aa13.87□□□□□ -0.19
TRIM28-205ENST00000595028 EXO1Q9UQ84 846 aaKnown RBP13.87□□□□□ -0.19
TRIM28-205ENST00000595028 TRAF6Q9Y4K3 522 aa13.87□□□□□ -0.19
TRIM28-205ENST00000595028 FREM3P0C091 2139 aa13.87□□□□□ -0.19
TRIM28-205ENST00000595028 NAV3Q8IVL0 2385 aa13.86□□□□□ -0.19
TRIM28-205ENST00000595028 ATP6AP2A0A1C7CYW4 349 aa13.86□□□□□ -0.19
TRIM28-205ENST00000595028 FRG2CA6NGY1 282 aa13.86□□□□□ -0.19
TRIM28-205ENST00000595028 E9PLN8 166 aa13.86□□□□□ -0.19
TRIM28-205ENST00000595028 ADAM10O14672 748 aa13.86□□□□□ -0.19
TRIM28-205ENST00000595028 PIP5K1BO14986 540 aa13.86□□□□□ -0.19
TRIM28-205ENST00000595028 LSM1O15116 133 aaKnown RBP13.86□□□□□ -0.19
TRIM28-205ENST00000595028 PLOD3O60568 738 aa13.86□□□□□ -0.19
TRIM28-205ENST00000595028 ATP6AP2O75787 350 aa13.86□□□□□ -0.19
TRIM28-205ENST00000595028 BCAS2O75934 225 aaPredicted RBP13.86□□□□□ -0.19
TRIM28-205ENST00000595028 NAGAP17050 411 aa13.86□□□□□ -0.19
TRIM28-205ENST00000595028 TACR1P25103 407 aa13.86□□□□□ -0.19
TRIM28-205ENST00000595028 NTSP30990 170 aa13.86□□□□□ -0.19
TRIM28-205ENST00000595028 ARRB2P32121 409 aa13.86□□□□□ -0.19
TRIM28-205ENST00000595028 MPIP34949 423 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms