RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 DDCP20711 480 aa11.37□□□□□ -0.59
SS18-225ENST00000585121 GDF1P27539 372 aa11.37□□□□□ -0.59
SS18-225ENST00000585121 ABCD3P28288 659 aa11.37□□□□□ -0.59
SS18-225ENST00000585121 PPICP45877 212 aa11.37□□□□□ -0.59
SS18-225ENST00000585121 PSPHP78330 225 aa11.37□□□□□ -0.59
SS18-225ENST00000585121 PLCXD2Q0VAA5 305 aa11.37□□□□□ -0.59
SS18-225ENST00000585121 LTB4RQ15722 352 aa11.37□□□□□ -0.59
SS18-225ENST00000585121 TRMT12Q53H54 448 aaKnown RBP11.37□□□□□ -0.59
SS18-225ENST00000585121 FAM180BQ6P0A1 224 aa11.37□□□□□ -0.59
SS18-225ENST00000585121 ZNF585AQ6P3V2 769 aa11.37□□□□□ -0.59
SS18-225ENST00000585121 NCCRP1Q6ZVX7 275 aaPredicted RBP11.37□□□□□ -0.59
SS18-225ENST00000585121 NUP54Q7Z3B4 507 aa11.37□□□□□ -0.59
SS18-225ENST00000585121 TRIM46Q7Z4K8 759 aa11.37□□□□□ -0.59
SS18-225ENST00000585121 MTERF4Q7Z6M4 381 aaKnown RBP11.37□□□□□ -0.59
SS18-225ENST00000585121 C10orf107Q8IVU9 208 aa11.37□□□□□ -0.59
SS18-225ENST00000585121 PRR22Q8IZ63 422 aa11.37□□□□□ -0.59
SS18-225ENST00000585121 FAM9CQ8IZT9 166 aa11.37□□□□□ -0.59
SS18-225ENST00000585121 OR5M9Q8NGP3 310 aa11.37□□□□□ -0.59
SS18-225ENST00000585121 OR2W6PQ8NHA6 318 aa11.37□□□□□ -0.59
SS18-225ENST00000585121 ZNF675Q8TD23 568 aa11.37□□□□□ -0.59
SS18-225ENST00000585121 CTHRC1Q96CG8 243 aa11.37□□□□□ -0.59
SS18-225ENST00000585121 APOPT1Q96IL0 206 aa11.37□□□□□ -0.59
SS18-225ENST00000585121 METTL2AQ96IZ6 378 aaKnown RBP11.37□□□□□ -0.59
SS18-225ENST00000585121 ITPAQ9BY32 194 aa11.37□□□□□ -0.59
SS18-225ENST00000585121 NXF5Q9H1B4 397 aaKnown RBP11.37□□□□□ -0.59
SS18-225ENST00000585121 C12orf65Q9H3J6 166 aaKnown RBP11.37□□□□□ -0.59
SS18-225ENST00000585121 ZNF703Q9H7S9 590 aaPredicted RBP11.37□□□□□ -0.59
SS18-225ENST00000585121 METTL7AQ9H8H3 244 aa11.37□□□□□ -0.59
SS18-225ENST00000585121 MKS1Q9NXB0 559 aa11.37□□□□□ -0.59
SS18-225ENST00000585121 LIPGQ9Y5X9 500 aa11.37□□□□□ -0.59
SS18-225ENST00000585121 ITPR2Q14571 2701 aa11.36□□□□□ -0.59
SS18-225ENST00000585121 AZIN1O14977 448 aa11.36□□□□□ -0.59
SS18-225ENST00000585121 RGS14O43566 566 aa11.36□□□□□ -0.59
SS18-225ENST00000585121 SEC22BO75396 215 aa11.36□□□□□ -0.59
SS18-225ENST00000585121 PPM1BO75688 479 aa11.36□□□□□ -0.59
SS18-225ENST00000585121 CBX7O95931 251 aa11.36□□□□□ -0.59
SS18-225ENST00000585121 HOXD4P09016 255 aaPredicted RBP11.36□□□□□ -0.59
SS18-225ENST00000585121 CELA3AP09093 270 aa11.36□□□□□ -0.59
SS18-225ENST00000585121 DRD5P21918 477 aa11.36□□□□□ -0.59
SS18-225ENST00000585121 ACVR2AP27037 513 aa11.36□□□□□ -0.59
SS18-225ENST00000585121 GRNP28799 593 aaKnown RBP11.36□□□□□ -0.59
SS18-225ENST00000585121 NTSP30990 170 aa11.36□□□□□ -0.59
SS18-225ENST00000585121 KRT20P35900 424 aa11.36□□□□□ -0.59
SS18-225ENST00000585121 MRPS35P82673 323 aaKnown RBP11.36□□□□□ -0.59
SS18-225ENST00000585121 NNATQ16517 81 aa11.36□□□□□ -0.59
SS18-225ENST00000585121 OR9A2Q8NGT5 310 aa11.36□□□□□ -0.59
SS18-225ENST00000585121 AENQ8WTP8 325 aaKnown RBP11.36□□□□□ -0.59
SS18-225ENST00000585121 RILPQ96NA2 401 aa11.36□□□□□ -0.59
SS18-225ENST00000585121 ANGPTL4Q9BY76 406 aa11.36□□□□□ -0.59
SS18-225ENST00000585121 STMN4Q9H169 189 aaPredicted RBP11.36□□□□□ -0.59
SS18-225ENST00000585121 PROK2Q9HC23 129 aa11.36□□□□□ -0.59
SS18-225ENST00000585121 EML4Q9HC35 981 aaKnown RBP11.36□□□□□ -0.59
SS18-225ENST00000585121 ACKR4Q9NPB9 350 aa11.36□□□□□ -0.59
SS18-225ENST00000585121 PNPLA3Q9NST1 481 aa11.36□□□□□ -0.59
SS18-225ENST00000585121 ALKBH4Q9NXW9 302 aa11.36□□□□□ -0.59
SS18-225ENST00000585121 POLR3HQ9Y535 204 aaPredicted RBP11.36□□□□□ -0.59
SS18-225ENST00000585121 CACNA1DQ01668 2161 aa11.36□□□□□ -0.59
SS18-225ENST00000585121 FRG2CA6NGY1 282 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 LRRC3CA6NJW4 275 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 FAM47E-STBD1D6RA91 191 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 WDR1O75083 606 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 TRIM3O75382 744 aaPredicted RBP11.35□□□□□ -0.59
SS18-225ENST00000585121 TRAPPC6AO75865 159 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 ABCB1P08183 1280 aaPredicted RBP11.35□□□□□ -0.59
SS18-225ENST00000585121 RFPL3SP0C7P2 107 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 NEFHP12036 1026 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 GABRA1P14867 456 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 CHRNB4P30926 498 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 PTGER4P35408 488 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 CASP3P42574 277 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 EMDP50402 254 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 DUSP2Q05923 314 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 PMPCAQ10713 525 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 TOMM20Q15388 145 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 ZNF628Q5EBL2 1059 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 NOXRED1Q6NXP6 359 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 B3GNT6Q6ZMB0 384 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 IKBIPQ70UQ0 350 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 TRABD2AQ86V40 505 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 TICAM1Q8IUC6 712 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 SRRM1Q8IYB3 904 aaKnown RBP11.35□□□□□ -0.59
SS18-225ENST00000585121 BANPQ8N9N5 519 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 OR10Q1Q8NGQ4 319 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 NEIL3Q8TAT5 605 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 KAT2AQ92830 837 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 CAVIN3Q969G5 261 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 TMCO6Q96DC7 493 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 OMA1Q96E52 524 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 DTNBP1Q96EV8 351 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 C11orf24Q96F05 449 aaPredicted RBP11.35□□□□□ -0.59
SS18-225ENST00000585121 FAM111AQ96PZ2 611 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 GATA5Q9BWX5 397 aaPredicted RBP11.35□□□□□ -0.59
SS18-225ENST00000585121 MYNNQ9NPC7 610 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 TAS2R9Q9NYW1 312 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 KLRF1Q9NZS2 232 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 LGALS13Q9UHV8 139 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 DTX4Q9Y2E6 619 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 FIS1Q9Y3D6 152 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 ZNF407Q9C0G0 2248 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 PLOD3O60568 738 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms