RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	PLK4	O00444	970 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	RGS5	O15539	181 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	PTP4A3	O75365	173 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	FGF19	O95750	216 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	STAT5A	P42229	794 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	WAS	P42768	502 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	NSG1	P42857	185 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	CTSC	P53634	463 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	MC1R	Q01726	317 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	MED22	Q15528	200 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	XKR6	Q5GH73	641 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	EEF1AKMT2	Q5JPI9	291 aa	Known RBP	10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	SYT6	Q5T7P8	510 aa	Predicted RBP	10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	ATCAY	Q86WG3	371 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	KIF18B	Q86Y91	864 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	ARMC8	Q8IUR7	673 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	NPAS3	Q8IXF0	933 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	KDF1	Q8NAX2	398 aa	Predicted RBP	10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	OR2A12	Q8NGT7	310 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	WFDC12	Q8WWY7	111 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	OR5M11	Q96RB7	305 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	SORBS1	Q9BX66	1292 aa	Known RBP	10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	TPT1P8	Q9HAU6	139 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	ZC4H2	Q9NQZ6	224 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	MSRA	Q9UJ68	235 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	DVL2	O14641	736 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	RAB3D	O95716	219 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	CSTA	P01040	98 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	IGFBP1	P08833	259 aa	Predicted RBP	10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	ETFA	P13804	333 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	DDX6	P26196	483 aa	Known RBP eCLIP	10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	ACAA2	P42765	397 aa	Known RBP	10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	FNTB	P49356	437 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	ST8SIA6	P61647	398 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	IRF8	Q02556	426 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	GAB1	Q13480	694 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	ZNF404	Q494X3	552 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063		Q5PR19	223 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	PYHIN1	Q6K0P9	492 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	CAPN13	Q6MZZ7	669 aa	Predicted RBP	10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	TPRG1	Q6ZUI0	275 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	VANGL1	Q8TAA9	524 aa	Predicted RBP	10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	S100Z	Q8WXG8	99 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	SCRN2	Q96FV2	425 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	ZNF764	Q96H86	408 aa	Predicted RBP	10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	IL4I1	Q96RQ9	567 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	NARFL	Q9H6Q4	476 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	TIGAR	Q9NQ88	270 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	NDRG4	Q9ULP0	352 aa	Known RBP	10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	ERVW-1	Q9UQF0	538 aa		10.99	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	SPEG	Q15772	3267 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	GNG14	A0A1W2PPG7	69 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	HEPACAM2	A8MVW5	462 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	WNT9A	O14904	365 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	DSCR3	O14972	297 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	HIST1H2AG	P0C0S8	130 aa	Predicted RBP	10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	PRPS2	P11908	318 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	AMD1	P17707	334 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	HIST1H2AD	P20671	130 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	FPR1	P21462	350 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	EIF2D	P41214	584 aa	Known RBP	10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	PFN3	P60673	137 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	COPZ1	P61923	177 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	TPRG1L	Q5T0D9	272 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	UBE2U	Q5VVX9	321 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	TANGO2	Q6ICL3	276 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	NXPE4	Q6UWF7	544 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	USP45	Q70EL2	814 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	C1orf52	Q8N6N3	182 aa	Known RBP	10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	HIST1H2AH	Q96KK5	128 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	C12orf57	Q99622	126 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	HIST1H2AJ	Q99878	128 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	H2AFJ	Q9BTM1	129 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	WRAP53	Q9BUR4	548 aa	Known RBP	10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	NECTIN3	Q9NQS3	549 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	PLCL2	Q9UPR0	1127 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	SH2B3	Q9UQQ2	575 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	HS3ST2	Q9Y278	367 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	MAP4K5	Q9Y4K4	846 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	AHRR	A9YTQ3	701 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	WWP2	O00308	870 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	TFEC	O14948	347 aa	Predicted RBP	10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	LRRTM2	O43300	516 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	CD63	P08962	238 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	ITGAM	P11215	1152 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	HOXB9	P17482	250 aa	Predicted RBP	10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	WNT3	P56703	355 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	SPIB	Q01892	262 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	MXD1	Q05195	221 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	ACOX1	Q15067	660 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	AGAP7P	Q5VUJ5	663 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	FRG2	Q64ET8	278 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	GDPD4	Q6W3E5	623 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	MMP21	Q8N119	569 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	STX19	Q8N4C7	294 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	PARP16	Q8N5Y8	322 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	TMIE	Q8NEW7	156 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	ASB11	Q8WXH4	323 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	ST8SIA2	Q92186	375 aa		10.98	□□□□□ -0.65
CDK5RAP3-231	ENST00000584063	GGH	Q92820	318 aa		10.98	□□□□□ -0.65

Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms