RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 TMEM107Q6UX40 140 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 TMEM184AQ6ZMB5 413 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 WDR53Q7Z5U6 358 aaPredicted RBP9.49□□□□□ -0.89
VPS53-220ENST00000576149 ZER1Q7Z7L7 766 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 ATCAYQ86WG3 371 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 TBC1D3Q8IZP1 549 aaPredicted RBP9.49□□□□□ -0.89
VPS53-220ENST00000576149 LINC00471Q8N535 108 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 OR8J1Q8NGP2 316 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 WDR36Q8NI36 951 aaKnown RBP9.49□□□□□ -0.89
VPS53-220ENST00000576149 KLHL6Q8WZ60 621 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 C16orf58Q96GQ5 468 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 PRRC1Q96M27 445 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 GABRG3Q99928 467 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 CHCHD6Q9BRQ6 235 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 CDADC1Q9BWV3 514 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 ROGDIQ9GZN7 287 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 MAN2C1Q9NTJ4 1040 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 OR6C2Q9NZP2 312 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 SNX7Q9UNH6 387 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 KLHL20Q9Y2M5 609 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 A0A1W2PS29 197 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 PRSS38A1L453 326 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 ISM1B1AKI9 464 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 TAF4O00268 1085 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 CCRL2O00421 344 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 ARHGAP33O14559 1287 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 EMC8O43402 210 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 MSL3P1P0C860 447 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 IMPDH2P12268 514 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 TNNI3P19429 210 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 MMP11P24347 488 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 MPIP34949 423 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 PRR5P85299 388 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 NCF4Q15080 339 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 OCLNQ16625 522 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 TSTQ16762 297 aaKnown RBP9.48□□□□□ -0.89
VPS53-220ENST00000576149 NDUFA9Q16795 377 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 TIMM50Q3ZCQ8 353 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 ANKRD54Q6NXT1 300 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 TUBA3EQ6PEY2 450 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 AMIGO1Q86WK6 493 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 MORN4Q8NDC4 146 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 OR4K5Q8NGD3 323 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 JPH3Q8WXH2 748 aaPredicted RBP9.48□□□□□ -0.89
VPS53-220ENST00000576149 ZNF681Q96N22 645 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 OR2M4Q96R27 311 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 TAPBPLQ9BX59 468 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 PINK1Q9BXM7 581 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 PBX4Q9BYU1 374 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 GIN1Q9NXP7 522 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 DNAJC27Q9NZQ0 273 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 TBC1D29Q9UFV1 150 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 LSM2Q9Y333 95 aaKnown RBP9.48□□□□□ -0.89
VPS53-220ENST00000576149 KCNE3Q9Y6H6 103 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 A0A1W2PQF6 199 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 KRBA1A5PL33 1030 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 A6NCN8 305 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 AGAP5A6NIR3 686 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 TPST2O60704 377 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 EML2O95834 649 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 ASGR2P07307 311 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 CHRM5P08912 532 aaPredicted RBP9.48□□□□□ -0.89
VPS53-220ENST00000576149 HOXC4P09017 264 aaPredicted RBP9.48□□□□□ -0.89
VPS53-220ENST00000576149 CSTF2P33240 577 aaKnown RBP eCLIP9.48□□□□□ -0.89
VPS53-220ENST00000576149 BUD31P41223 144 aaPredicted RBP9.48□□□□□ -0.89
VPS53-220ENST00000576149 CD97P48960 835 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 STXBP1P61764 594 aaKnown RBP9.48□□□□□ -0.89
VPS53-220ENST00000576149 PPP2CBP62714 309 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 PPP2CAP67775 309 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 SSX1Q16384 188 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 GPAT3Q53EU6 434 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 C1orf94Q6P1W5 598 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 HMGN2P46Q86SG4 172 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 PAQR7Q86WK9 346 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 TCEANCQ8N8B7 351 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 IL17RCQ8NAC3 791 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 OR4E2Q8NGC2 313 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 ELP4Q96EB1 424 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 TMEM80Q96HE8 168 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 SLC6A18Q96N87 628 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 OR7D2Q96RA2 312 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 NEURL2Q9BR09 285 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 C6orf62Q9GZU0 229 aaPredicted RBP9.48□□□□□ -0.89
VPS53-220ENST00000576149 GIMAP4Q9NUV9 329 aa9.48□□□□□ -0.89
VPS53-220ENST00000576149 RPL36Q9Y3U8 105 aaKnown RBP9.48□□□□□ -0.89
VPS53-220ENST00000576149 POM121BA6NF01 834 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 EPOPA6NHQ4 379 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 ASNA1O43681 348 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 ADAM23O75077 832 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 SCG5P05408 212 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 PORP16435 677 aaPredicted RBP9.47□□□□□ -0.89
VPS53-220ENST00000576149 MC3RP41968 323 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 HSD17B7P56937 341 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 LSM11P83369 360 aaKnown RBP eCLIP9.47□□□□□ -0.89
VPS53-220ENST00000576149 ZNF91Q05481 1191 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 TJAP1Q5JTD0 557 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 ENTPD8Q5MY95 495 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 ATAT1Q5SQI0 421 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 SLC25A30Q5SVS4 291 aa9.47□□□□□ -0.89
VPS53-220ENST00000576149 RNLSQ5VYX0 342 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms