RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 SPATC1Q76KD6 591 aa21.44■■□□□ 1.02
VPS53-211ENST00000571805 CELF2-AS1Q8N7Q2 184 aa21.44■■□□□ 1.02
VPS53-211ENST00000571805 GPR151Q8TDV0 419 aa21.44■■□□□ 1.02
VPS53-211ENST00000571805 EFHD2Q96C19 240 aaPredicted RBP21.44■■□□□ 1.02
VPS53-211ENST00000571805 PINK1Q9BXM7 581 aa21.44■■□□□ 1.02
VPS53-211ENST00000571805 MRPS30Q9NP92 439 aaKnown RBP21.44■■□□□ 1.02
VPS53-211ENST00000571805 SSR3Q9UNL2 185 aa21.44■■□□□ 1.02
VPS53-211ENST00000571805 ZFR2Q9UPR6 939 aaKnown RBP21.44■■□□□ 1.02
VPS53-211ENST00000571805 RWDD3Q9Y3V2 267 aa21.44■■□□□ 1.02
VPS53-211ENST00000571805 CDH23Q9H251 3354 aa21.43■■□□□ 1.02
VPS53-211ENST00000571805 TEAD1P28347 426 aa21.43■■□□□ 1.02
VPS53-211ENST00000571805 WASP42768 502 aa21.43■■□□□ 1.02
VPS53-211ENST00000571805 UAP1L1Q3KQV9 507 aa21.43■■□□□ 1.02
VPS53-211ENST00000571805 BHLHB9Q6PI77 547 aa21.43■■□□□ 1.02
VPS53-211ENST00000571805 USP30Q70CQ3 517 aa21.43■■□□□ 1.02
VPS53-211ENST00000571805 OR2A14Q96R47 310 aa21.43■■□□□ 1.02
VPS53-211ENST00000571805 PRR14Q9BWN1 585 aa21.43■■□□□ 1.02
VPS53-211ENST00000571805 QRSL1Q9H0R6 528 aaKnown RBP21.43■■□□□ 1.02
VPS53-211ENST00000571805 SYNPO2LQ9H987 977 aa21.43■■□□□ 1.02
VPS53-211ENST00000571805 MRPS18AQ9NVS2 196 aaKnown RBP21.43■■□□□ 1.02
VPS53-211ENST00000571805 GOLGA4Q13439 2230 aaKnown RBP21.43■■□□□ 1.02
VPS53-211ENST00000571805 A0A087WUU8 490 aa21.43■■□□□ 1.02
VPS53-211ENST00000571805 AIFM1O95831 613 aa21.43■■□□□ 1.02
VPS53-211ENST00000571805 FCARP24071 287 aa21.43■■□□□ 1.02
VPS53-211ENST00000571805 GJA4P35212 333 aa21.43■■□□□ 1.02
VPS53-211ENST00000571805 CASP3P42574 277 aa21.43■■□□□ 1.02
VPS53-211ENST00000571805 TGM4P49221 684 aa21.43■■□□□ 1.02
VPS53-211ENST00000571805 ANXA11P50995 505 aaKnown RBP21.43■■□□□ 1.02
VPS53-211ENST00000571805 SMSP52788 366 aa21.43■■□□□ 1.02
VPS53-211ENST00000571805 GNA13Q14344 377 aa21.43■■□□□ 1.02
VPS53-211ENST00000571805 GPAT3Q53EU6 434 aa21.43■■□□□ 1.02
VPS53-211ENST00000571805 C2orf27AQ580R0 203 aa21.43■■□□□ 1.02
VPS53-211ENST00000571805 C18orf63Q68DL7 685 aa21.43■■□□□ 1.02
VPS53-211ENST00000571805 TMEM107Q6UX40 140 aa21.43■■□□□ 1.02
VPS53-211ENST00000571805 OR52E1Q8NGJ3 308 aa21.43■■□□□ 1.02
VPS53-211ENST00000571805 KLK6Q92876 244 aa21.43■■□□□ 1.02
VPS53-211ENST00000571805 CHFRQ96EP1 664 aa21.43■■□□□ 1.02
VPS53-211ENST00000571805 WDFY2Q96P53 400 aa21.43■■□□□ 1.02
VPS53-211ENST00000571805 TIMM29Q9BSF4 260 aa21.43■■□□□ 1.02
VPS53-211ENST00000571805 BTBD1Q9H0C5 482 aa21.43■■□□□ 1.02
VPS53-211ENST00000571805 RSPH9Q9H1X1 276 aaPredicted RBP21.43■■□□□ 1.02
VPS53-211ENST00000571805 MUTYHQ9UIF7 546 aa21.43■■□□□ 1.02
VPS53-211ENST00000571805 POU2F3Q9UKI9 436 aa21.43■■□□□ 1.02
VPS53-211ENST00000571805 SLC35F4A4IF30 521 aa21.42■■□□□ 1.02
VPS53-211ENST00000571805 PRR19A6NJB7 356 aa21.42■■□□□ 1.02
VPS53-211ENST00000571805 OR52A4PA6NMU1 304 aa21.42■■□□□ 1.02
VPS53-211ENST00000571805 RGS5O15539 181 aa21.42■■□□□ 1.02
VPS53-211ENST00000571805 KAT7O95251 611 aa21.42■■□□□ 1.02
VPS53-211ENST00000571805 APOA1P02647 267 aa21.42■■□□□ 1.02
VPS53-211ENST00000571805 C8orf89P0DMQ9 161 aa21.42■■□□□ 1.02
VPS53-211ENST00000571805 CPEP16870 476 aa21.42■■□□□ 1.02
VPS53-211ENST00000571805 GSTM3P21266 225 aa21.42■■□□□ 1.02
VPS53-211ENST00000571805 SNAPC1Q16533 368 aa21.42■■□□□ 1.02
VPS53-211ENST00000571805 MEX3DQ86XN8 651 aaKnown RBP21.42■■□□□ 1.02
VPS53-211ENST00000571805 EGLN3Q9H6Z9 239 aa21.42■■□□□ 1.02
VPS53-211ENST00000571805 PHPT1Q9NRX4 125 aaPredicted RBP21.42■■□□□ 1.02
VPS53-211ENST00000571805 TXNL4BQ9NX01 149 aaKnown RBP21.42■■□□□ 1.02
VPS53-211ENST00000571805 STON1Q9Y6Q2 735 aa21.42■■□□□ 1.02
VPS53-211ENST00000571805 HTR3EA5X5Y0 456 aa21.41■■□□□ 1.02
VPS53-211ENST00000571805 PLD2O14939 933 aa21.41■■□□□ 1.02
VPS53-211ENST00000571805 FHP07954 510 aa21.41■■□□□ 1.02
VPS53-211ENST00000571805 PSPHP78330 225 aa21.41■■□□□ 1.02
VPS53-211ENST00000571805 BNC1Q01954 994 aa21.41■■□□□ 1.02
VPS53-211ENST00000571805 C3orf38Q5JPI3 329 aa21.41■■□□□ 1.02
VPS53-211ENST00000571805 PRAMEF8Q5VWM4 474 aa21.41■■□□□ 1.02
VPS53-211ENST00000571805 PRAMEF7Q5VXH5 474 aa21.41■■□□□ 1.02
VPS53-211ENST00000571805 TANGO2Q6ICL3 276 aa21.41■■□□□ 1.02
VPS53-211ENST00000571805 MRGPREQ86SM8 312 aa21.41■■□□□ 1.02
VPS53-211ENST00000571805 LAX1Q8IWV1 398 aa21.41■■□□□ 1.02
VPS53-211ENST00000571805 FBXL6Q8N531 539 aa21.41■■□□□ 1.02
VPS53-211ENST00000571805 GALNT6Q8NCL4 622 aa21.41■■□□□ 1.02
VPS53-211ENST00000571805 OR2L5Q8NG80 312 aa21.41■■□□□ 1.02
VPS53-211ENST00000571805 OR56A1Q8NGH5 318 aa21.41■■□□□ 1.02
VPS53-211ENST00000571805 OR9Q1Q8NGQ5 310 aa21.41■■□□□ 1.02
VPS53-211ENST00000571805 MOAP1Q96BY2 351 aa21.41■■□□□ 1.02
VPS53-211ENST00000571805 RAB11FIP5Q9BXF6 653 aa21.41■■□□□ 1.02
VPS53-211ENST00000571805 CARD8Q9Y2G2 431 aa21.41■■□□□ 1.02
VPS53-211ENST00000571805 MDC1Q14676 2089 aaKnown RBP21.41■■□□□ 1.02
VPS53-211ENST00000571805 ASNA1O43681 348 aa21.41■■□□□ 1.02
VPS53-211ENST00000571805 DYRK3O43781 588 aa21.41■■□□□ 1.02
VPS53-211ENST00000571805 CEACAM5P06731 702 aa21.41■■□□□ 1.02
VPS53-211ENST00000571805 MYOGP15173 224 aa21.41■■□□□ 1.02
VPS53-211ENST00000571805 AHRP35869 848 aa21.41■■□□□ 1.02
VPS53-211ENST00000571805 LARS2Q15031 903 aaKnown RBP21.41■■□□□ 1.02
VPS53-211ENST00000571805 ZNF79Q15937 498 aa21.41■■□□□ 1.02
VPS53-211ENST00000571805 KLHL22Q53GT1 634 aa21.41■■□□□ 1.02
VPS53-211ENST00000571805 ATAT1Q5SQI0 421 aa21.41■■□□□ 1.02
VPS53-211ENST00000571805 SLC48A1Q6P1K1 146 aa21.41■■□□□ 1.02
VPS53-211ENST00000571805 PRICKLE2Q7Z3G6 844 aa21.41■■□□□ 1.02
VPS53-211ENST00000571805 OR8H2Q8N162 312 aa21.41■■□□□ 1.02
VPS53-211ENST00000571805 HDDC3Q8N4P3 179 aa21.41■■□□□ 1.02
VPS53-211ENST00000571805 ZNF513Q8N8E2 541 aaPredicted RBP21.41■■□□□ 1.02
VPS53-211ENST00000571805 TMEM163Q8TC26 289 aa21.41■■□□□ 1.02
VPS53-211ENST00000571805 ZG16BQ96DA0 208 aa21.41■■□□□ 1.02
VPS53-211ENST00000571805 OR7D2Q96RA2 312 aa21.41■■□□□ 1.02
VPS53-211ENST00000571805 SLC38A1Q9H2H9 487 aa21.41■■□□□ 1.02
VPS53-211ENST00000571805 FGF20Q9NP95 211 aaPredicted RBP21.41■■□□□ 1.02
VPS53-211ENST00000571805 IQCMA0A1B0GVH7 501 aa21.4■■□□□ 1.02
VPS53-211ENST00000571805 PEBP1P30086 187 aaKnown RBP21.4■■□□□ 1.02
VPS53-211ENST00000571805 ZMAT1Q5H9K5 638 aa21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms