RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 KLHL29Q96CT2 875 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 CNRIP1Q96F85 164 aaPredicted RBP14.69□□□□□ -0.06
CLN3-229ENST00000567963 LCORQ96JN0 433 aaPredicted RBP14.69□□□□□ -0.06
CLN3-229ENST00000567963 ZNF681Q96N22 645 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 HBEGFQ99075 208 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 SH3GL2Q99962 352 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 FAIM2Q9BWQ8 316 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 ITPAQ9BY32 194 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 METTL7AQ9H8H3 244 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 VPS29Q9UBQ0 182 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 PLLPQ9Y342 182 aa14.69□□□□□ -0.06
CLN3-229ENST00000567963 ACOX3O15254 700 aa14.68□□□□□ -0.06
CLN3-229ENST00000567963 ICOSLGO75144 302 aa14.68□□□□□ -0.06
CLN3-229ENST00000567963 CBX7O95931 251 aa14.68□□□□□ -0.06
CLN3-229ENST00000567963 UQCRC1P31930 480 aa14.68□□□□□ -0.06
CLN3-229ENST00000567963 ALDH9A1P49189 494 aa14.68□□□□□ -0.06
CLN3-229ENST00000567963 ART1P52961 327 aa14.68□□□□□ -0.06
CLN3-229ENST00000567963 WIPI1Q5MNZ9 446 aaPredicted RBP14.68□□□□□ -0.06
CLN3-229ENST00000567963 LGSNQ5TDP6 509 aa14.68□□□□□ -0.06
CLN3-229ENST00000567963 NSUN5P2Q63ZY6 315 aa14.68□□□□□ -0.06
CLN3-229ENST00000567963 SLC30A6Q6NXT4 461 aa14.68□□□□□ -0.06
CLN3-229ENST00000567963 TIFABQ6ZNK6 161 aa14.68□□□□□ -0.06
CLN3-229ENST00000567963 FAM83FQ8NEG4 500 aaPredicted RBP14.68□□□□□ -0.06
CLN3-229ENST00000567963 OR52R1Q8NGF1 315 aa14.68□□□□□ -0.06
CLN3-229ENST00000567963 ABTB1Q969K4 478 aaPredicted RBP14.68□□□□□ -0.06
CLN3-229ENST00000567963 OMA1Q96E52 524 aa14.68□□□□□ -0.06
CLN3-229ENST00000567963 WDYHV1Q96HA8 205 aa14.68□□□□□ -0.06
CLN3-229ENST00000567963 NODALQ96S42 347 aa14.68□□□□□ -0.06
CLN3-229ENST00000567963 UGT2B28Q9BY64 529 aa14.68□□□□□ -0.06
CLN3-229ENST00000567963 DNAJB12Q9NXW2 375 aaKnown RBP14.68□□□□□ -0.06
CLN3-229ENST00000567963 FETUBQ9UGM5 382 aa14.68□□□□□ -0.06
CLN3-229ENST00000567963 CAMK2AQ9UQM7 478 aa14.68□□□□□ -0.06
CLN3-229ENST00000567963 ZNF780BQ9Y6R6 833 aa14.68□□□□□ -0.06
CLN3-229ENST00000567963 ZNF469Q96JG9 3925 aaPredicted RBP14.67□□□□□ -0.06
CLN3-229ENST00000567963 KIAA1549Q9HCM3 1950 aa14.67□□□□□ -0.06
CLN3-229ENST00000567963 FAM221AA4D161 298 aa14.67□□□□□ -0.06
CLN3-229ENST00000567963 MANBAO00462 879 aa14.67□□□□□ -0.06
CLN3-229ENST00000567963 SUPT7LO94864 414 aa14.67□□□□□ -0.06
CLN3-229ENST00000567963 HSD3B1P14060 373 aa14.67□□□□□ -0.06
CLN3-229ENST00000567963 DRD5P21918 477 aa14.67□□□□□ -0.06
CLN3-229ENST00000567963 HSD3B2P26439 372 aa14.67□□□□□ -0.06
CLN3-229ENST00000567963 GCAP28676 217 aa14.67□□□□□ -0.06
CLN3-229ENST00000567963 PTGDSP41222 190 aa14.67□□□□□ -0.06
CLN3-229ENST00000567963 PPICP45877 212 aa14.67□□□□□ -0.06
CLN3-229ENST00000567963 EMDP50402 254 aa14.67□□□□□ -0.06
CLN3-229ENST00000567963 ASCL1P50553 236 aa14.67□□□□□ -0.06
CLN3-229ENST00000567963 ZNF136P52737 540 aa14.67□□□□□ -0.06
CLN3-229ENST00000567963 NAGLUP54802 743 aa14.67□□□□□ -0.06
CLN3-229ENST00000567963 DCAF7P61962 342 aa14.67□□□□□ -0.06
CLN3-229ENST00000567963 SNTA1Q13424 505 aa14.67□□□□□ -0.06
CLN3-229ENST00000567963 RASA2Q15283 850 aa14.67□□□□□ -0.06
CLN3-229ENST00000567963 FBXL19-AS1Q494R0 122 aa14.67□□□□□ -0.06
CLN3-229ENST00000567963 UNC50Q53HI1 259 aa14.67□□□□□ -0.06
CLN3-229ENST00000567963 TCHHL1Q5QJ38 904 aaPredicted RBP14.67□□□□□ -0.06
CLN3-229ENST00000567963 ZNF678Q5SXM1 525 aa14.67□□□□□ -0.06
CLN3-229ENST00000567963 ANGPTL8Q6UXH0 198 aa14.67□□□□□ -0.06
CLN3-229ENST00000567963 CDYL2Q8N8U2 506 aa14.67□□□□□ -0.06
CLN3-229ENST00000567963 MNS1Q8NEH6 495 aa14.67□□□□□ -0.06
CLN3-229ENST00000567963 ZNF592Q92610 1267 aa14.67□□□□□ -0.06
CLN3-229ENST00000567963 LRRC46Q96FV0 321 aa14.67□□□□□ -0.06
CLN3-229ENST00000567963 POLDIP3Q9BY77 421 aaKnown RBP14.67□□□□□ -0.06
CLN3-229ENST00000567963 CRIM1Q9NZV1 1036 aa14.67□□□□□ -0.06
CLN3-229ENST00000567963 TMEM216Q9P0N5 145 aa14.67□□□□□ -0.06
CLN3-229ENST00000567963 HEY2Q9UBP5 337 aa14.67□□□□□ -0.06
CLN3-229ENST00000567963 PRODH2Q9UF12 536 aa14.67□□□□□ -0.06
CLN3-229ENST00000567963 MCM8Q9UJA3 840 aa14.67□□□□□ -0.06
CLN3-229ENST00000567963 UTS2RQ9UKP6 389 aa14.67□□□□□ -0.06
CLN3-229ENST00000567963 EXO1Q9UQ84 846 aaKnown RBP14.67□□□□□ -0.06
CLN3-229ENST00000567963 EXOC1LA0A1B0GW35 172 aa14.66□□□□□ -0.06
CLN3-229ENST00000567963 C2orf72A6NCS6 295 aa14.66□□□□□ -0.06
CLN3-229ENST00000567963 CD8B2A6NJW9 211 aa14.66□□□□□ -0.06
CLN3-229ENST00000567963 SNPHO15079 494 aa14.66□□□□□ -0.06
CLN3-229ENST00000567963 DLX3O60479 287 aa14.66□□□□□ -0.06
CLN3-229ENST00000567963 UGT2B11O75310 529 aa14.66□□□□□ -0.06
CLN3-229ENST00000567963 ULK1O75385 1050 aa14.66□□□□□ -0.06
CLN3-229ENST00000567963 KRT6AP02538 564 aa14.66□□□□□ -0.06
CLN3-229ENST00000567963 KRT6BP04259 564 aa14.66□□□□□ -0.06
CLN3-229ENST00000567963 RHOXF2BP0C7M4 288 aa14.66□□□□□ -0.06
CLN3-229ENST00000567963 CTAGE8P0CG41 777 aa14.66□□□□□ -0.06
CLN3-229ENST00000567963 PCSK2P16519 638 aa14.66□□□□□ -0.06
CLN3-229ENST00000567963 TAC1P20366 129 aa14.66□□□□□ -0.06
CLN3-229ENST00000567963 KRT6CP48668 564 aa14.66□□□□□ -0.06
CLN3-229ENST00000567963 IST1P53990 364 aa14.66□□□□□ -0.06
CLN3-229ENST00000567963 MRPS35P82673 323 aaKnown RBP14.66□□□□□ -0.06
CLN3-229ENST00000567963 PLCXD2Q0VAA5 305 aa14.66□□□□□ -0.06
CLN3-229ENST00000567963 LTB4RQ15722 352 aa14.66□□□□□ -0.06
CLN3-229ENST00000567963 DCST1Q5T197 706 aa14.66□□□□□ -0.06
CLN3-229ENST00000567963 YRDCQ86U90 279 aaKnown RBP14.66□□□□□ -0.06
CLN3-229ENST00000567963 CTAGE4Q8IX94 777 aa14.66□□□□□ -0.06
CLN3-229ENST00000567963 CCDC116Q8IYX3 515 aa14.66□□□□□ -0.06
CLN3-229ENST00000567963 RNASE6Q93091 150 aaKnown RBP14.66□□□□□ -0.06
CLN3-229ENST00000567963 TRIB1Q96RU8 372 aa14.66□□□□□ -0.06
CLN3-229ENST00000567963 ZNF382Q96SR6 550 aa14.66□□□□□ -0.06
CLN3-229ENST00000567963 GPATCH1Q9BRR8 931 aaKnown RBP14.66□□□□□ -0.06
CLN3-229ENST00000567963 OSBPL11Q9BXB4 747 aa14.66□□□□□ -0.06
CLN3-229ENST00000567963 EPB41L4BQ9H329 900 aa14.66□□□□□ -0.06
CLN3-229ENST00000567963 CALHM2Q9HA72 323 aa14.66□□□□□ -0.06
CLN3-229ENST00000567963 GALNT9Q9HCQ5 603 aa14.66□□□□□ -0.06
CLN3-229ENST00000567963 RASSF1Q9NS23 344 aa14.66□□□□□ -0.06
CLN3-229ENST00000567963 EHD3Q9NZN3 535 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms