RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 NUBPLQ8TB37 319 aa15.97■□□□□ 0.15
CLN3-217ENST00000565354 SLC22A8Q8TCC7 542 aa15.97■□□□□ 0.15
CLN3-217ENST00000565354 ZNF675Q8TD23 568 aa15.97■□□□□ 0.15
CLN3-217ENST00000565354 ACTRT2Q8TDY3 377 aa15.97■□□□□ 0.15
CLN3-217ENST00000565354 ASB15Q8WXK1 588 aa15.97■□□□□ 0.15
CLN3-217ENST00000565354 CIDECQ96AQ7 238 aaPredicted RBP15.97■□□□□ 0.15
CLN3-217ENST00000565354 ZBED6CLQ96FA7 236 aaPredicted RBP15.97■□□□□ 0.15
CLN3-217ENST00000565354 ZNF764Q96H86 408 aaPredicted RBP15.97■□□□□ 0.15
CLN3-217ENST00000565354 GLIPR2Q9H4G4 154 aa15.97■□□□□ 0.15
CLN3-217ENST00000565354 MYOTQ9UBF9 498 aa15.97■□□□□ 0.15
CLN3-217ENST00000565354 ATP6V1HQ9UI12 483 aa15.97■□□□□ 0.15
CLN3-217ENST00000565354 OSGIN2Q9Y236 505 aa15.97■□□□□ 0.15
CLN3-217ENST00000565354 MTORP42345 2549 aa15.97■□□□□ 0.15
CLN3-217ENST00000565354 MED13LQ71F56 2210 aa15.96■□□□□ 0.15
CLN3-217ENST00000565354 TRAV17A0A0B4J275 112 aa15.96■□□□□ 0.15
CLN3-217ENST00000565354 C2orf92A0A1B0GVN3 265 aa15.96■□□□□ 0.15
CLN3-217ENST00000565354 PRAMEF2O60811 474 aa15.96■□□□□ 0.15
CLN3-217ENST00000565354 OR2J2O76002 312 aa15.96■□□□□ 0.15
CLN3-217ENST00000565354 SLITRK5O94991 958 aa15.96■□□□□ 0.15
CLN3-217ENST00000565354 TGDSO95455 350 aa15.96■□□□□ 0.15
CLN3-217ENST00000565354 CYB561P49447 251 aa15.96■□□□□ 0.15
CLN3-217ENST00000565354 TUBA3CQ13748 450 aa15.96■□□□□ 0.15
CLN3-217ENST00000565354 ZNF169Q14929 603 aaPredicted RBP15.96■□□□□ 0.15
CLN3-217ENST00000565354 PRSS53Q2L4Q9 553 aa15.96■□□□□ 0.15
CLN3-217ENST00000565354 PGS1Q32NB8 556 aa15.96■□□□□ 0.15
CLN3-217ENST00000565354 TRMT12Q53H54 448 aaKnown RBP15.96■□□□□ 0.15
CLN3-217ENST00000565354 ZNF628Q5EBL2 1059 aa15.96■□□□□ 0.15
CLN3-217ENST00000565354 TUBA3EQ6PEY2 450 aa15.96■□□□□ 0.15
CLN3-217ENST00000565354 MAVSQ7Z434 540 aa15.96■□□□□ 0.15
CLN3-217ENST00000565354 KRTCAP2Q8N6L1 136 aa15.96■□□□□ 0.15
CLN3-217ENST00000565354 NATD1Q8N6N6 113 aa15.96■□□□□ 0.15
CLN3-217ENST00000565354 CATSPER1Q8NEC5 780 aa15.96■□□□□ 0.15
CLN3-217ENST00000565354 OR52R1Q8NGF1 315 aa15.96■□□□□ 0.15
CLN3-217ENST00000565354 MAGED4Q96JG8 741 aa15.96■□□□□ 0.15
CLN3-217ENST00000565354 AMDHD1Q96NU7 426 aa15.96■□□□□ 0.15
CLN3-217ENST00000565354 WWTR1Q9GZV5 400 aa15.96■□□□□ 0.15
CLN3-217ENST00000565354 RUBCNLQ9H714 662 aa15.96■□□□□ 0.15
CLN3-217ENST00000565354 LRFN1Q9P244 771 aa15.96■□□□□ 0.15
CLN3-217ENST00000565354 PRODH2Q9UF12 536 aa15.96■□□□□ 0.15
CLN3-217ENST00000565354 ERVK-11Q9UQG0 969 aa15.96■□□□□ 0.15
CLN3-217ENST00000565354 CSAG2Q9Y5P2 127 aa15.96■□□□□ 0.15
CLN3-217ENST00000565354 CPAMD8Q8IZJ3 1885 aa15.96■□□□□ 0.15
CLN3-217ENST00000565354 A8MVJ9 347 aa15.95■□□□□ 0.14
CLN3-217ENST00000565354 PRSS44E7EML9 344 aa15.95■□□□□ 0.14
CLN3-217ENST00000565354 CDK2AP1O14519 115 aa15.95■□□□□ 0.14
CLN3-217ENST00000565354 EDF1O60869 148 aaKnown RBP15.95■□□□□ 0.14
CLN3-217ENST00000565354 COQ9O75208 318 aa15.95■□□□□ 0.14
CLN3-217ENST00000565354 VIMP08670 466 aaKnown RBP15.95■□□□□ 0.14
CLN3-217ENST00000565354 CD46P15529 392 aa15.95■□□□□ 0.14
CLN3-217ENST00000565354 CLNS1AP54105 237 aaKnown RBP15.95■□□□□ 0.14
CLN3-217ENST00000565354 AQP5P55064 265 aa15.95■□□□□ 0.14
CLN3-217ENST00000565354 NME5P56597 212 aa15.95■□□□□ 0.14
CLN3-217ENST00000565354 GUCY1A3Q02108 690 aa15.95■□□□□ 0.14
CLN3-217ENST00000565354 EBPQ15125 230 aaKnown RBP15.95■□□□□ 0.14
CLN3-217ENST00000565354 OR1C1Q15619 314 aa15.95■□□□□ 0.14
CLN3-217ENST00000565354 EPGNQ6UW88 154 aa15.95■□□□□ 0.14
CLN3-217ENST00000565354 TMEM107Q6UX40 140 aa15.95■□□□□ 0.14
CLN3-217ENST00000565354 C16orf47Q6ZP98 133 aaPredicted RBP15.95■□□□□ 0.14
CLN3-217ENST00000565354 SZRD1Q7Z422 152 aa15.95■□□□□ 0.14
CLN3-217ENST00000565354 TAGAPQ8N103 731 aa15.95■□□□□ 0.14
CLN3-217ENST00000565354 TMEM125Q96AQ2 219 aa15.95■□□□□ 0.14
CLN3-217ENST00000565354 ERP27Q96DN0 273 aa15.95■□□□□ 0.14
CLN3-217ENST00000565354 THOC1Q96FV9 657 aaKnown RBP15.95■□□□□ 0.14
CLN3-217ENST00000565354 MAELQ96JY0 434 aaKnown RBP15.95■□□□□ 0.14
CLN3-217ENST00000565354 ZBTB18Q99592 522 aa15.95■□□□□ 0.14
CLN3-217ENST00000565354 DUSP26Q9BV47 211 aa15.95■□□□□ 0.14
CLN3-217ENST00000565354 TCF7L2Q9NQB0 619 aa15.95■□□□□ 0.14
CLN3-217ENST00000565354 DDX18Q9NVP1 670 aaKnown RBP15.95■□□□□ 0.14
CLN3-217ENST00000565354 AIG1Q9NVV5 245 aa15.95■□□□□ 0.14
CLN3-217ENST00000565354 HPF1Q9NWY4 346 aa15.95■□□□□ 0.14
CLN3-217ENST00000565354 NF1P21359 2839 aa15.95■□□□□ 0.14
CLN3-217ENST00000565354 A0A1W2PRB8 838 aa15.94■□□□□ 0.14
CLN3-217ENST00000565354 ZNF195O14628 629 aa15.94■□□□□ 0.14
CLN3-217ENST00000565354 UBDO15205 165 aa15.94■□□□□ 0.14
CLN3-217ENST00000565354 CLPSP04118 112 aa15.94■□□□□ 0.14
CLN3-217ENST00000565354 ALDOCP09972 364 aaKnown RBP15.94■□□□□ 0.14
CLN3-217ENST00000565354 LAMP1P11279 417 aa15.94■□□□□ 0.14
CLN3-217ENST00000565354 EDN3P14138 238 aa15.94■□□□□ 0.14
CLN3-217ENST00000565354 IDO1P14902 403 aa15.94■□□□□ 0.14
CLN3-217ENST00000565354 EFNA1P20827 205 aaPredicted RBP15.94■□□□□ 0.14
CLN3-217ENST00000565354 CD96P40200 585 aa15.94■□□□□ 0.14
CLN3-217ENST00000565354 MC3RP41968 323 aa15.94■□□□□ 0.14
CLN3-217ENST00000565354 TNFSF10P50591 281 aa15.94■□□□□ 0.14
CLN3-217ENST00000565354 HLCSP50747 726 aa15.94■□□□□ 0.14
CLN3-217ENST00000565354 NR0B1P51843 470 aaKnown RBP15.94■□□□□ 0.14
CLN3-217ENST00000565354 STX1BP61266 288 aa15.94■□□□□ 0.14
CLN3-217ENST00000565354 MGAT2Q10469 447 aa15.94■□□□□ 0.14
CLN3-217ENST00000565354 OPN5Q6U736 354 aa15.94■□□□□ 0.14
CLN3-217ENST00000565354 IL20RBQ6UXL0 311 aa15.94■□□□□ 0.14
CLN3-217ENST00000565354 ZNF551Q7Z340 670 aaPredicted RBP15.94■□□□□ 0.14
CLN3-217ENST00000565354 CYP4Z2PQ8N1L4 340 aa15.94■□□□□ 0.14
CLN3-217ENST00000565354 ARMC10Q8N2F6 343 aa15.94■□□□□ 0.14
CLN3-217ENST00000565354 ZNF615Q8N8J6 731 aa15.94■□□□□ 0.14
CLN3-217ENST00000565354 C16orf52Q8NHV5 167 aa15.94■□□□□ 0.14
CLN3-217ENST00000565354 GRHL3Q8TE85 626 aa15.94■□□□□ 0.14
CLN3-217ENST00000565354 CTHRC1Q96CG8 243 aa15.94■□□□□ 0.14
CLN3-217ENST00000565354 MARK4Q96L34 752 aa15.94■□□□□ 0.14
CLN3-217ENST00000565354 OR52B2Q96RD2 323 aa15.94■□□□□ 0.14
CLN3-217ENST00000565354 RASL10BQ96S79 203 aa15.94■□□□□ 0.14
CLN3-217ENST00000565354 BHLHE41Q9C0J9 482 aaPredicted RBP15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms