RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 IFI6P09912 130 aa12.33□□□□□ -0.44
CLK3-213ENST00000563842 PCSK2P16519 638 aa12.33□□□□□ -0.44
CLK3-213ENST00000563842 SDC1P18827 310 aa12.33□□□□□ -0.44
CLK3-213ENST00000563842 RFC3P40938 356 aa12.33□□□□□ -0.44
CLK3-213ENST00000563842 CA7P43166 264 aa12.33□□□□□ -0.44
CLK3-213ENST00000563842 EMDP50402 254 aa12.33□□□□□ -0.44
CLK3-213ENST00000563842 ABCE1P61221 599 aaKnown RBP12.33□□□□□ -0.44
CLK3-213ENST00000563842 KCNJ2P63252 427 aa12.33□□□□□ -0.44
CLK3-213ENST00000563842 MRPS35P82673 323 aaKnown RBP12.33□□□□□ -0.44
CLK3-213ENST00000563842 MAD2L1Q13257 205 aaPredicted RBP12.33□□□□□ -0.44
CLK3-213ENST00000563842 HYAL4Q2M3T9 481 aa12.33□□□□□ -0.44
CLK3-213ENST00000563842 RFTN2Q52LD8 501 aaPredicted RBP12.33□□□□□ -0.44
CLK3-213ENST00000563842 HHATQ5VTY9 493 aa12.33□□□□□ -0.44
CLK3-213ENST00000563842 C1QL3Q5VWW1 255 aa12.33□□□□□ -0.44
CLK3-213ENST00000563842 TMEM198Q66K66 360 aa12.33□□□□□ -0.44
CLK3-213ENST00000563842 ARHGAP11AQ6P4F7 1023 aa12.33□□□□□ -0.44
CLK3-213ENST00000563842 Q6ZPB1 254 aaPredicted RBP12.33□□□□□ -0.44
CLK3-213ENST00000563842 NUP54Q7Z3B4 507 aa12.33□□□□□ -0.44
CLK3-213ENST00000563842 R3HCC1LQ7Z5L2 792 aaKnown RBP12.33□□□□□ -0.44
CLK3-213ENST00000563842 FJX1Q86VR8 437 aa12.33□□□□□ -0.44
CLK3-213ENST00000563842 FAM109AQ8N4B1 249 aa12.33□□□□□ -0.44
CLK3-213ENST00000563842 OR10G3Q8NGC4 313 aa12.33□□□□□ -0.44
CLK3-213ENST00000563842 OR9A2Q8NGT5 310 aa12.33□□□□□ -0.44
CLK3-213ENST00000563842 ZFP28Q8NHY6 868 aa12.33□□□□□ -0.44
CLK3-213ENST00000563842 DIO2Q92813 273 aa12.33□□□□□ -0.44
CLK3-213ENST00000563842 KAT2AQ92830 837 aa12.33□□□□□ -0.44
CLK3-213ENST00000563842 PKNOX2Q96KN3 472 aa12.33□□□□□ -0.44
CLK3-213ENST00000563842 ITPAQ9BY32 194 aa12.33□□□□□ -0.44
CLK3-213ENST00000563842 TTTY12Q9BZ98 90 aa12.33□□□□□ -0.44
CLK3-213ENST00000563842 NXF5Q9H1B4 397 aaKnown RBP12.33□□□□□ -0.44
CLK3-213ENST00000563842 REEP4Q9H6H4 257 aa12.33□□□□□ -0.44
CLK3-213ENST00000563842 ZNF835Q9Y2P0 537 aa12.33□□□□□ -0.44
CLK3-213ENST00000563842 CHCHD2Q9Y6H1 151 aaPredicted RBP12.33□□□□□ -0.44
CLK3-213ENST00000563842 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.33□□□□□ -0.44
CLK3-213ENST00000563842 PHF3Q92576 2039 aaKnown RBP12.33□□□□□ -0.44
CLK3-213ENST00000563842 NCKAP5O14513 1909 aa12.33□□□□□ -0.44
CLK3-213ENST00000563842 FRG2CA6NGY1 282 aa12.32□□□□□ -0.44
CLK3-213ENST00000563842 G3V3Y1 287 aa12.32□□□□□ -0.44
CLK3-213ENST00000563842 CCL21O00585 134 aa12.32□□□□□ -0.44
CLK3-213ENST00000563842 TO15178 435 aa12.32□□□□□ -0.44
CLK3-213ENST00000563842 PDPK1O15530 556 aa12.32□□□□□ -0.44
CLK3-213ENST00000563842 CDC40O60508 579 aaKnown RBP eCLIP12.32□□□□□ -0.44
CLK3-213ENST00000563842 ABCB7O75027 752 aa12.32□□□□□ -0.44
CLK3-213ENST00000563842 PPM1BO75688 479 aa12.32□□□□□ -0.44
CLK3-213ENST00000563842 SNX4O95219 450 aa12.32□□□□□ -0.44
CLK3-213ENST00000563842 JUNP05412 331 aaKnown RBP12.32□□□□□ -0.44
CLK3-213ENST00000563842 ESRRAP11474 423 aaPredicted RBP12.32□□□□□ -0.44
CLK3-213ENST00000563842 PRPS2P11908 318 aa12.32□□□□□ -0.44
CLK3-213ENST00000563842 TACR1P25103 407 aa12.32□□□□□ -0.44
CLK3-213ENST00000563842 ABCD3P28288 659 aa12.32□□□□□ -0.44
CLK3-213ENST00000563842 PTGS2P35354 604 aa12.32□□□□□ -0.44
CLK3-213ENST00000563842 KRT20P35900 424 aa12.32□□□□□ -0.44
CLK3-213ENST00000563842 SLC1A6P48664 564 aa12.32□□□□□ -0.44
CLK3-213ENST00000563842 DNASE1L1P49184 302 aa12.32□□□□□ -0.44
CLK3-213ENST00000563842 SLC18A1P54219 525 aa12.32□□□□□ -0.44
CLK3-213ENST00000563842 STX3Q13277 289 aa12.32□□□□□ -0.44
CLK3-213ENST00000563842 CMPK2Q5EBM0 449 aa12.32□□□□□ -0.44
CLK3-213ENST00000563842 XKR7Q5GH72 579 aa12.32□□□□□ -0.44
CLK3-213ENST00000563842 OR5M3Q8NGP4 307 aa12.32□□□□□ -0.44
CLK3-213ENST00000563842 PPCDCQ96CD2 204 aa12.32□□□□□ -0.44
CLK3-213ENST00000563842 TUBGCP3Q96CW5 907 aa12.32□□□□□ -0.44
CLK3-213ENST00000563842 EGLN2Q96KS0 407 aa12.32□□□□□ -0.44
CLK3-213ENST00000563842 TSSK3Q96PN8 268 aa12.32□□□□□ -0.44
CLK3-213ENST00000563842 PAIP2Q9BPZ3 127 aaKnown RBP12.32□□□□□ -0.44
CLK3-213ENST00000563842 DOHHQ9BU89 302 aa12.32□□□□□ -0.44
CLK3-213ENST00000563842 ZDHHC11Q9H8X9 412 aa12.32□□□□□ -0.44
CLK3-213ENST00000563842 ZFP64Q9NPA5 681 aa12.32□□□□□ -0.44
CLK3-213ENST00000563842 QPCTLQ9NXS2 382 aa12.32□□□□□ -0.44
CLK3-213ENST00000563842 SH3BP4Q9P0V3 963 aa12.32□□□□□ -0.44
CLK3-213ENST00000563842 B4GALT7Q9UBV7 327 aa12.32□□□□□ -0.44
CLK3-213ENST00000563842 CNOT11Q9UKZ1 510 aaKnown RBP12.32□□□□□ -0.44
CLK3-213ENST00000563842 RAP2CQ9Y3L5 183 aa12.32□□□□□ -0.44
CLK3-213ENST00000563842 COL12A1Q99715 3063 aa12.32□□□□□ -0.44
CLK3-213ENST00000563842 NCOA6Q14686 2063 aaPredicted RBP12.31□□□□□ -0.44
CLK3-213ENST00000563842 PINLYPA6NC86 204 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 TTC36A6NLP5 189 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 FAM166BA8MTA8 275 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 PLOD2O00469 737 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 PEX11AO75192 247 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 ERN1O75460 977 aaKnown RBP12.31□□□□□ -0.44
CLK3-213ENST00000563842 SKAP2O75563 359 aaPredicted RBP12.31□□□□□ -0.44
CLK3-213ENST00000563842 LYPLA1O75608 230 aaPredicted RBP12.31□□□□□ -0.44
CLK3-213ENST00000563842 GLSO94925 669 aaPredicted RBP12.31□□□□□ -0.44
CLK3-213ENST00000563842 BCKDHAP12694 445 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 GP1BBP13224 206 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 PTGER1P34995 402 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 GPC1P35052 558 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 SOX18P35713 384 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 HPCAL1P37235 193 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 PIGAP37287 484 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 FBXW4P57775 412 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 MRPS22P82650 360 aaKnown RBP12.31□□□□□ -0.44
CLK3-213ENST00000563842 PLCXD2Q0VAA5 305 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 FOXO1Q12778 655 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 DUSP8Q13202 625 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 SLC10A1Q14973 349 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 SMU1Q2TAY7 513 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 C6orf136Q5SQH8 315 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 PRAMEF20Q5VT98 475 aa12.31□□□□□ -0.44
CLK3-213ENST00000563842 PACS2Q86VP3 889 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms