RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 CHST2Q9Y4C5 530 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 KLF2Q9Y5W3 355 aaPredicted RBP4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 IGLV3-22A0A075B6J6 115 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 TRBV5-7A0A0A0MS05 114 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 IGKV6D-21A0A0A0MT36 114 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 A0A1B0GVL5 298 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 A0A1W2PPV4 95 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 RNF222A6NCQ9 220 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 CASTOR2A6NHX0 329 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 B4DGG1 531 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 K7ERI5 159 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 ZNF197O14709 1029 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 TRDMT1O14717 391 aaKnown RBP4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 RRHO14718 337 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 POLR1CO15160 346 aaPredicted RBP4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 RPS6KA5O75582 802 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 NEURL1O76050 574 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 TDP2O95551 362 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 CAVIN2O95810 425 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 SFTPBP07988 381 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 SERPINF2P08697 491 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 SMIM10L2AP0DMW4 78 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 SMIM10L2BP0DMW5 78 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 CBSLP0DN79 551 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 ST6GAL1P15907 406 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 HOXA5P20719 270 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 PCSK6P29122 969 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 CBSP35520 551 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 PIGAP37287 484 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 GPR12P47775 334 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 SLC6A8P48029 635 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 P2RX3P56373 397 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 TMPRSS3P57727 454 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 MAT1AQ00266 395 aaKnown RBP4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 SULT2A1Q06520 285 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 PNRC1Q12796 327 aaPredicted RBP4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 ILF2Q12905 390 aaKnown RBP4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 PLA2G7Q13093 441 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 ANGPT1Q15389 498 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 TATDN3Q17R31 274 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 VMACQ2NL98 169 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 TMEM119Q4V9L6 283 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 XKR7Q5GH72 579 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 PPP6R3Q5H9R7 873 aaPredicted RBP4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 CTSL3PQ5NE16 218 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 LAIR1Q6GTX8 287 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 CAPN13Q6MZZ7 669 aaPredicted RBP4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 METTL2BQ6P1Q9 378 aaKnown RBP4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 KCNIP4Q6PIL6 250 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 ZNF852Q6ZMS4 543 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 Q6ZPB1 254 aaPredicted RBP4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 NDUFAF7Q7L592 441 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 LINC00523Q86TU6 105 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 CCDC36Q8IYA8 594 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 SLC38A6Q8IZM9 456 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 ARL14EPQ8N8R7 260 aaPredicted RBP4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 THAP8Q8NA92 274 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 TXNDC5Q8NBS9 432 aaKnown RBP4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 SLC38A9Q8NBW4 561 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 SCCPDHQ8NBX0 429 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 LINC00301Q8NCQ3 95 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 ABHD11Q8NFV4 315 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 OR52I2Q8NH67 350 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 RP9Q8TA86 221 aaKnown RBP4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 ST8SIA1Q92185 356 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 RAB1CQ92928 201 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 RAB39BQ96DA2 213 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 MBD6Q96DN6 1003 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 METTL2AQ96IZ6 378 aaKnown RBP4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 CXorf58Q96LI9 332 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 GUCD1Q96NT3 240 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 HSD17B14Q9BPX1 270 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 GSDMCQ9BYG8 508 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 FAM234AQ9H0X4 552 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 UBTD1Q9HAC8 227 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 MLXIPLQ9NP71 852 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 SLC2A4RGQ9NR83 387 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 PNO1Q9NRX1 252 aaKnown RBP4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 SLC2A8Q9NY64 477 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 WWOXQ9NZC7 414 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 HACD3Q9P035 362 aa4.79□□□□□ -1.64
VPS35P1-201ENST00000563400 ZMYM2Q9UBW7 1377 aa4.78□□□□□ -1.64
VPS35P1-201ENST00000563400 TRAV24A0A0B4J272 114 aa4.78□□□□□ -1.64
VPS35P1-201ENST00000563400 HSFX4A0A1B0GTS1 333 aaPredicted RBP4.78□□□□□ -1.64
VPS35P1-201ENST00000563400 HSFX3A0A1B0GWH4 333 aaPredicted RBP4.78□□□□□ -1.64
VPS35P1-201ENST00000563400 PVALEFA0A1B0GWK0 134 aa4.78□□□□□ -1.64
VPS35P1-201ENST00000563400 GSTTP1A0A1W2PQM5 241 aa4.78□□□□□ -1.64
VPS35P1-201ENST00000563400 PCP4L1A6NKN8 68 aa4.78□□□□□ -1.64
VPS35P1-201ENST00000563400 SNTNA6NMZ2 147 aa4.78□□□□□ -1.64
VPS35P1-201ENST00000563400 WASHC1A8K0Z3 465 aa4.78□□□□□ -1.64
VPS35P1-201ENST00000563400 TMEM150CB9EJG8 249 aa4.78□□□□□ -1.64
VPS35P1-201ENST00000563400 CHUKO15111 745 aa4.78□□□□□ -1.64
VPS35P1-201ENST00000563400 DUX1O43812 170 aa4.78□□□□□ -1.64
VPS35P1-201ENST00000563400 TIMM8AO60220 97 aaPredicted RBP4.78□□□□□ -1.64
VPS35P1-201ENST00000563400 NOBOXO60393 691 aa4.78□□□□□ -1.64
VPS35P1-201ENST00000563400 HAPLN1P10915 354 aaPredicted RBP4.78□□□□□ -1.64
VPS35P1-201ENST00000563400 FCGR1AP12314 374 aa4.78□□□□□ -1.64
VPS35P1-201ENST00000563400 ANPEPP15144 967 aa4.78□□□□□ -1.64
VPS35P1-201ENST00000563400 EZRP15311 586 aaKnown RBP4.78□□□□□ -1.64
VPS35P1-201ENST00000563400 ZNF24P17028 368 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms