RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 OXSMQ9NWU1 459 aa15.46■□□□□ 0.07
CLK3-210ENST00000563112 SIRT5Q9NXA8 310 aa15.46■□□□□ 0.07
CLK3-210ENST00000563112 PHF3Q92576 2039 aaKnown RBP15.46■□□□□ 0.07
CLK3-210ENST00000563112 TLDC2A0PJX2 215 aa15.45■□□□□ 0.06
CLK3-210ENST00000563112 C19orf84I3L1E1 186 aa15.45■□□□□ 0.06
CLK3-210ENST00000563112 UBFD1O14562 309 aaKnown RBP15.45■□□□□ 0.06
CLK3-210ENST00000563112 PPM1BO75688 479 aa15.45■□□□□ 0.06
CLK3-210ENST00000563112 TRAPPC6AO75865 159 aa15.45■□□□□ 0.06
CLK3-210ENST00000563112 CBX7O95931 251 aa15.45■□□□□ 0.06
CLK3-210ENST00000563112 ABCB1P08183 1280 aaPredicted RBP15.45■□□□□ 0.06
CLK3-210ENST00000563112 GABRA1P14867 456 aa15.45■□□□□ 0.06
CLK3-210ENST00000563112 KRT4P19013 534 aa15.45■□□□□ 0.06
CLK3-210ENST00000563112 DRD5P21918 477 aa15.45■□□□□ 0.06
CLK3-210ENST00000563112 CASP3P42574 277 aa15.45■□□□□ 0.06
CLK3-210ENST00000563112 PPICP45877 212 aa15.45■□□□□ 0.06
CLK3-210ENST00000563112 NUP107P57740 925 aa15.45■□□□□ 0.06
CLK3-210ENST00000563112 MRPS35P82673 323 aaKnown RBP15.45■□□□□ 0.06
CLK3-210ENST00000563112 DUSP2Q05923 314 aa15.45■□□□□ 0.06
CLK3-210ENST00000563112 PLCXD2Q0VAA5 305 aa15.45■□□□□ 0.06
CLK3-210ENST00000563112 LTB4RQ15722 352 aa15.45■□□□□ 0.06
CLK3-210ENST00000563112 NNATQ16517 81 aa15.45■□□□□ 0.06
CLK3-210ENST00000563112 ERCC6LQ2NKX8 1250 aa15.45■□□□□ 0.06
CLK3-210ENST00000563112 TRMT12Q53H54 448 aaKnown RBP15.45■□□□□ 0.06
CLK3-210ENST00000563112 FRMD7Q6ZUT3 714 aa15.45■□□□□ 0.06
CLK3-210ENST00000563112 LILRB4Q8NHJ6 448 aa15.45■□□□□ 0.06
CLK3-210ENST00000563112 CDC26Q8NHZ8 85 aa15.45■□□□□ 0.06
CLK3-210ENST00000563112 BBS4Q96RK4 519 aa15.45■□□□□ 0.06
CLK3-210ENST00000563112 SPOCK3Q9BQ16 436 aa15.45■□□□□ 0.06
CLK3-210ENST00000563112 EBPLQ9BY08 206 aa15.45■□□□□ 0.06
CLK3-210ENST00000563112 METTL7AQ9H8H3 244 aa15.45■□□□□ 0.06
CLK3-210ENST00000563112 KCNJ16Q9NPI9 418 aa15.45■□□□□ 0.06
CLK3-210ENST00000563112 SLC35C2Q9NQQ7 365 aa15.45■□□□□ 0.06
CLK3-210ENST00000563112 EHD3Q9NZN3 535 aa15.45■□□□□ 0.06
CLK3-210ENST00000563112 SENP1Q9P0U3 644 aa15.45■□□□□ 0.06
CLK3-210ENST00000563112 TNFRSF10DQ9UBN6 386 aa15.45■□□□□ 0.06
CLK3-210ENST00000563112 DTX4Q9Y2E6 619 aa15.45■□□□□ 0.06
CLK3-210ENST00000563112 PLLPQ9Y342 182 aa15.45■□□□□ 0.06
CLK3-210ENST00000563112 ENO4A6NNW6 628 aa15.44■□□□□ 0.06
CLK3-210ENST00000563112 PCSK2P16519 638 aa15.44■□□□□ 0.06
CLK3-210ENST00000563112 MPIP34949 423 aa15.44■□□□□ 0.06
CLK3-210ENST00000563112 KIR3DL1P43629 444 aa15.44■□□□□ 0.06
CLK3-210ENST00000563112 TRPC1P48995 793 aa15.44■□□□□ 0.06
CLK3-210ENST00000563112 FOXA1P55317 472 aa15.44■□□□□ 0.06
CLK3-210ENST00000563112 SLC18A2Q05940 514 aa15.44■□□□□ 0.06
CLK3-210ENST00000563112 ZNF763Q0D2J5 394 aa15.44■□□□□ 0.06
CLK3-210ENST00000563112 C2orf80Q0P641 193 aa15.44■□□□□ 0.06
CLK3-210ENST00000563112 C1orf185Q5T7R7 199 aa15.44■□□□□ 0.06
CLK3-210ENST00000563112 LIPMQ5VYY2 423 aa15.44■□□□□ 0.06
CLK3-210ENST00000563112 BICRALQ6AI39 1079 aa15.44■□□□□ 0.06
CLK3-210ENST00000563112 CCDC71Q8IV32 467 aaPredicted RBP15.44■□□□□ 0.06
CLK3-210ENST00000563112 C4orf33Q8N1A6 199 aa15.44■□□□□ 0.06
CLK3-210ENST00000563112 RPRMLQ8N4K4 120 aa15.44■□□□□ 0.06
CLK3-210ENST00000563112 NEIL3Q8TAT5 605 aa15.44■□□□□ 0.06
CLK3-210ENST00000563112 FAM76AQ8TAV0 307 aa15.44■□□□□ 0.06
CLK3-210ENST00000563112 OMA1Q96E52 524 aa15.44■□□□□ 0.06
CLK3-210ENST00000563112 TTYH2Q9BSA4 534 aa15.44■□□□□ 0.06
CLK3-210ENST00000563112 SLC6A15Q9H2J7 730 aa15.44■□□□□ 0.06
CLK3-210ENST00000563112 MIEF1Q9NQG6 463 aa15.44■□□□□ 0.06
CLK3-210ENST00000563112 SPRR3Q9UBC9 169 aa15.44■□□□□ 0.06
CLK3-210ENST00000563112 WBP11Q9Y2W2 641 aaKnown RBP15.44■□□□□ 0.06
CLK3-210ENST00000563112 PCDHGB3Q9Y5G1 929 aa15.44■□□□□ 0.06
CLK3-210ENST00000563112 TACC2O95359 2948 aa15.43■□□□□ 0.06
CLK3-210ENST00000563112 FAM90A27PA6NNH2 459 aa15.43■□□□□ 0.06
CLK3-210ENST00000563112 FAM47E-STBD1D6RA91 191 aa15.43■□□□□ 0.06
CLK3-210ENST00000563112 UROSP10746 265 aa15.43■□□□□ 0.06
CLK3-210ENST00000563112 EMDP50402 254 aa15.43■□□□□ 0.06
CLK3-210ENST00000563112 PSPHP78330 225 aa15.43■□□□□ 0.06
CLK3-210ENST00000563112 DUSP8Q13202 625 aa15.43■□□□□ 0.06
CLK3-210ENST00000563112 TOMM20Q15388 145 aa15.43■□□□□ 0.06
CLK3-210ENST00000563112 ZNF628Q5EBL2 1059 aa15.43■□□□□ 0.06
CLK3-210ENST00000563112 SLC30A6Q6NXT4 461 aa15.43■□□□□ 0.06
CLK3-210ENST00000563112 MEX3BQ6ZN04 569 aaKnown RBP15.43■□□□□ 0.06
CLK3-210ENST00000563112 TRIM46Q7Z4K8 759 aa15.43■□□□□ 0.06
CLK3-210ENST00000563112 HOMEZQ8IX15 550 aa15.43■□□□□ 0.06
CLK3-210ENST00000563112 FAM9CQ8IZT9 166 aa15.43■□□□□ 0.06
CLK3-210ENST00000563112 RIBC1Q8N443 379 aaPredicted RBP15.43■□□□□ 0.06
CLK3-210ENST00000563112 SIMC1Q8NDZ2 872 aa15.43■□□□□ 0.06
CLK3-210ENST00000563112 OR9A2Q8NGT5 310 aa15.43■□□□□ 0.06
CLK3-210ENST00000563112 KAT2AQ92830 837 aa15.43■□□□□ 0.06
CLK3-210ENST00000563112 C11orf24Q96F05 449 aaPredicted RBP15.43■□□□□ 0.06
CLK3-210ENST00000563112 TMEM41AQ96HV5 264 aa15.43■□□□□ 0.06
CLK3-210ENST00000563112 ENKD1Q9H0I2 346 aa15.43■□□□□ 0.06
CLK3-210ENST00000563112 ANKZF1Q9H8Y5 726 aa15.43■□□□□ 0.06
CLK3-210ENST00000563112 FAM215AQ9Y5M1 114 aa15.43■□□□□ 0.06
CLK3-210ENST00000563112 FREM3P0C091 2139 aa15.43■□□□□ 0.06
CLK3-210ENST00000563112 C15orf38-AP3S2A0A0A6YYH1 394 aa15.42■□□□□ 0.06
CLK3-210ENST00000563112 FRG2CA6NGY1 282 aa15.42■□□□□ 0.06
CLK3-210ENST00000563112 TO15178 435 aa15.42■□□□□ 0.06
CLK3-210ENST00000563112 REM1O75628 298 aa15.42■□□□□ 0.06
CLK3-210ENST00000563112 RSL1D1O76021 490 aaKnown RBP15.42■□□□□ 0.06
CLK3-210ENST00000563112 HPNP05981 417 aa15.42■□□□□ 0.06
CLK3-210ENST00000563112 GLI4P10075 376 aa15.42■□□□□ 0.06
CLK3-210ENST00000563112 DDCP20711 480 aa15.42■□□□□ 0.06
CLK3-210ENST00000563112 ENDOUP21128 410 aaKnown RBP15.42■□□□□ 0.06
CLK3-210ENST00000563112 ELAVL4P26378 380 aaKnown RBP15.42■□□□□ 0.06
CLK3-210ENST00000563112 SSTR2P30874 369 aa15.42■□□□□ 0.06
CLK3-210ENST00000563112 KRT20P35900 424 aa15.42■□□□□ 0.06
CLK3-210ENST00000563112 ZFP36L2P47974 494 aaKnown RBP15.42■□□□□ 0.06
CLK3-210ENST00000563112 IFFO1Q0D2I5 559 aa15.42■□□□□ 0.06
CLK3-210ENST00000563112 SNTA1Q13424 505 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms