RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 IGFL3Q6UXB1 125 aa9.05□□□□□ -0.96
CLK3-208ENST00000562626 DNAJC14Q6Y2X3 702 aaPredicted RBP9.05□□□□□ -0.96
CLK3-208ENST00000562626 MIER2Q8N344 545 aa9.05□□□□□ -0.96
CLK3-208ENST00000562626 OR2L13Q8N349 312 aa9.05□□□□□ -0.96
CLK3-208ENST00000562626 OR8K3Q8NH51 312 aa9.05□□□□□ -0.96
CLK3-208ENST00000562626 OR5AK3PQ8NH89 298 aa9.05□□□□□ -0.96
CLK3-208ENST00000562626 PSMA8Q8TAA3 256 aa9.05□□□□□ -0.96
CLK3-208ENST00000562626 NUBPLQ8TB37 319 aa9.05□□□□□ -0.96
CLK3-208ENST00000562626 FBXO30Q8TB52 745 aa9.05□□□□□ -0.96
CLK3-208ENST00000562626 FAM120BQ96EK7 910 aaKnown RBP9.05□□□□□ -0.96
CLK3-208ENST00000562626 ZBED6CLQ96FA7 236 aaPredicted RBP9.05□□□□□ -0.96
CLK3-208ENST00000562626 ART5Q96L15 291 aa9.05□□□□□ -0.96
CLK3-208ENST00000562626 VSTM2LQ96N03 204 aa9.05□□□□□ -0.96
CLK3-208ENST00000562626 RILPQ96NA2 401 aa9.05□□□□□ -0.96
CLK3-208ENST00000562626 ELAC2Q9BQ52 826 aaKnown RBP9.05□□□□□ -0.96
CLK3-208ENST00000562626 FOLH1BQ9HBA9 442 aa9.05□□□□□ -0.96
CLK3-208ENST00000562626 STMN3Q9NZ72 180 aa9.05□□□□□ -0.96
CLK3-208ENST00000562626 CCDC167Q9P0B6 97 aa9.05□□□□□ -0.96
CLK3-208ENST00000562626 MAP10Q9P2G4 905 aa9.05□□□□□ -0.96
CLK3-208ENST00000562626 TUBD1Q9UJT1 453 aa9.05□□□□□ -0.96
CLK3-208ENST00000562626 HEMK1Q9Y5R4 338 aaPredicted RBP9.05□□□□□ -0.96
CLK3-208ENST00000562626 MPDZO75970 2070 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 PRRC2CQ9Y520 2896 aaKnown RBP9.04□□□□□ -0.96
CLK3-208ENST00000562626 A0A0G2JMM0 328 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 C2orf92A0A1B0GVN3 265 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 A0A1W2PPB8 328 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 A0A1W2PRS3 328 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 GXYLT2A0PJZ3 443 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 GMNCA6NCL1 334 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 SYNDIG1LA6NDD5 238 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 KIR3DP1A8MWS1 328 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 NR5A2O00482 541 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 NEURL1O76050 574 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 CPSF4O95639 269 aaKnown RBP9.04□□□□□ -0.96
CLK3-208ENST00000562626 GSNP06396 782 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 PGRP06401 933 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 ACP2P11117 423 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 HOXB9P17482 250 aaPredicted RBP9.04□□□□□ -0.96
CLK3-208ENST00000562626 NCF2P19878 526 aaPredicted RBP9.04□□□□□ -0.96
CLK3-208ENST00000562626 S100A3P33764 101 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 GPC1P35052 558 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 RPL3P39023 403 aaKnown RBP9.04□□□□□ -0.96
CLK3-208ENST00000562626 MAP3K8P41279 467 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 TNFSF10P50591 281 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 ATP4BP51164 291 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 NR0B1P51843 470 aaKnown RBP9.04□□□□□ -0.96
CLK3-208ENST00000562626 POLR2JP52435 117 aaKnown RBP9.04□□□□□ -0.96
CLK3-208ENST00000562626 CLNS1AP54105 237 aaKnown RBP9.04□□□□□ -0.96
CLK3-208ENST00000562626 CASP9P55211 416 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 RPS26P62854 115 aaKnown RBP9.04□□□□□ -0.96
CLK3-208ENST00000562626 PSG6Q00889 435 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 SQLEQ14534 574 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 RPS6KA2Q15349 733 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 TLR1Q15399 786 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 MEP1AQ16819 746 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 PLEKHN1Q494U1 663 aaPredicted RBP9.04□□□□□ -0.96
CLK3-208ENST00000562626 AGKQ53H12 422 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 PRR30Q53SZ7 412 aaPredicted RBP9.04□□□□□ -0.96
CLK3-208ENST00000562626 PAGE3Q5JUK9 113 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 ABHD17BQ5VST6 288 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 IRAK1BP1Q5VVH5 260 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 SLC6A19Q695T7 634 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 SPINK14Q6IE38 97 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 SLC2A7Q6PXP3 512 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 BLOC1S3Q6QNY0 202 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 MDGA2Q7Z553 956 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 SAMD14Q8IZD0 417 aaPredicted RBP9.04□□□□□ -0.96
CLK3-208ENST00000562626 SLC5A8Q8N695 610 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 MDS2Q8NDY4 140 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 OR7G1Q8NGA0 311 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 OR5P2Q8WZ92 322 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 SLC39A7Q92504 469 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 HOXB13Q92826 284 aaPredicted RBP9.04□□□□□ -0.96
CLK3-208ENST00000562626 WBP1Q96G27 269 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 ZNF354BQ96LW1 612 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 CCDC115Q96NT0 180 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 OR52E6Q96RD3 313 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 SIKE1Q9BRV8 207 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 YIPF4Q9BSR8 244 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 NMUR2Q9GZQ4 415 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 SLC25A18Q9H1K4 315 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 EPS8L2Q9H6S3 715 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 EQTNQ9NQ60 294 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 SAR1AQ9NR31 198 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 ATAD3AQ9NVI7 634 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 SLAMF8Q9P0V8 285 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 NTMQ9P121 344 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 GPR55Q9Y2T6 319 aaPredicted RBP9.04□□□□□ -0.96
CLK3-208ENST00000562626 KCNE3Q9Y6H6 103 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 ARHGAP21Q5T5U3 1957 aa9.04□□□□□ -0.96
CLK3-208ENST00000562626 PRSS51A0A1B0GVH4 220 aa9.03□□□□□ -0.96
CLK3-208ENST00000562626 FAM234BA2RU67 622 aa9.03□□□□□ -0.96
CLK3-208ENST00000562626 OR5H15A6NDH6 313 aa9.03□□□□□ -0.96
CLK3-208ENST00000562626 OR6C76A6NM76 312 aa9.03□□□□□ -0.96
CLK3-208ENST00000562626 RNASET2O00584 256 aaKnown RBP9.03□□□□□ -0.96
CLK3-208ENST00000562626 CFLARO15519 480 aa9.03□□□□□ -0.96
CLK3-208ENST00000562626 EMC8O43402 210 aa9.03□□□□□ -0.96
CLK3-208ENST00000562626 SNX3O60493 162 aa9.03□□□□□ -0.96
CLK3-208ENST00000562626 PRAMEF2O60811 474 aa9.03□□□□□ -0.96
CLK3-208ENST00000562626 SHOX2O60902 331 aaPredicted RBP9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms