RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 DGKQP52824 942 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 HBA1P69905 142 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 RPP38P78345 283 aaKnown RBP9.34□□□□□ -0.91
USP3-216ENST00000559873 OC90Q02509 493 aaPredicted RBP9.34□□□□□ -0.91
USP3-216ENST00000559873 PRSS53Q2L4Q9 553 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 C6orf10Q5SRN2 563 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 FHL5Q5TD97 284 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 GKAP1Q5VSY0 366 aaPredicted RBP9.34□□□□□ -0.91
USP3-216ENST00000559873 B3GNTL1Q67FW5 361 aaPredicted RBP9.34□□□□□ -0.91
USP3-216ENST00000559873 ZCCHC12Q6PEW1 402 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 BLOC1S3Q6QNY0 202 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 OPN5Q6U736 354 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 IGFL2Q6UWQ7 119 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 IGFL3Q6UXB1 125 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 ASB18Q6ZVZ8 466 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 ANKRD46Q86W74 232 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 CLECL1Q8IZS7 167 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 BEST3Q8N1M1 668 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 ZNF321PQ8N8H1 164 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 CDRT4Q8N9R6 151 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 NUP43Q8NFH3 380 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 DNAJB8Q8NHS0 232 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 DOK4Q8TEW6 326 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 THAP3Q8WTV1 239 aaPredicted RBP9.34□□□□□ -0.91
USP3-216ENST00000559873 TSPEARQ8WU66 669 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 FAM120BQ96EK7 910 aaKnown RBP9.34□□□□□ -0.91
USP3-216ENST00000559873 HSPBAP1Q96EW2 488 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 LCORQ96JN0 433 aaPredicted RBP9.34□□□□□ -0.91
USP3-216ENST00000559873 TEX37Q96LM6 180 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 BTBD9Q96Q07 612 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 UTP23Q9BRU9 249 aaKnown RBP9.34□□□□□ -0.91
USP3-216ENST00000559873 ITPAQ9BY32 194 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 ZNF385DQ9H6B1 395 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 FOLH1BQ9HBA9 442 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 Q9N2J8 555 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 STMN3Q9NZ72 180 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 MRTO4Q9UKD2 239 aaKnown RBP9.34□□□□□ -0.91
USP3-216ENST00000559873 FAF1Q9UNN5 650 aaPredicted RBP9.34□□□□□ -0.91
USP3-216ENST00000559873 TP53TG5Q9Y2B4 290 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 OR10H1Q9Y4A9 318 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 CNTRLQ7Z7A1 2325 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 RNF103-CHMP3A0A140T963 221 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 A0A1W2PP18 115 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 FRG2CA6NGY1 282 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 BBIP1A8MTZ0 92 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 A8MVJ9 347 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 WWP2O00308 870 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 ATXN7O15265 892 aaPredicted RBP9.33□□□□□ -0.92
USP3-216ENST00000559873 PRKNO60260 465 aaPredicted RBP9.33□□□□□ -0.92
USP3-216ENST00000559873 DCTN3O75935 186 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 OR2J2O76002 312 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 PSMG1O95456 288 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 FAM107AO95990 144 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 AGR2O95994 175 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 CLPSP04118 112 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 S1PR1P21453 382 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 DRD5P21918 477 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 UQCRC2P22695 453 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 TRHRP34981 398 aaPredicted RBP9.33□□□□□ -0.92
USP3-216ENST00000559873 CHI3L1P36222 383 aaPredicted RBP9.33□□□□□ -0.92
USP3-216ENST00000559873 PPICP45877 212 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 TRPC1P48995 793 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 EMDP50402 254 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 HLCSP50747 726 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 NR0B1P51843 470 aaKnown RBP9.33□□□□□ -0.92
USP3-216ENST00000559873 PRKAG1P54619 331 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 PSMD4P55036 377 aaKnown RBP9.33□□□□□ -0.92
USP3-216ENST00000559873 WNT3P56703 355 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 MRPS22P82650 360 aaKnown RBP9.33□□□□□ -0.92
USP3-216ENST00000559873 TXNL4AP83876 142 aaKnown RBP9.33□□□□□ -0.92
USP3-216ENST00000559873 PLCXD2Q0VAA5 305 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 SF3A3Q12874 501 aaKnown RBP eCLIP9.33□□□□□ -0.92
USP3-216ENST00000559873 TLR1Q15399 786 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 FCRLBQ6BAA4 426 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 ANGPTL8Q6UXH0 198 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 CYP4Z2PQ8N1L4 340 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 ANKS4BQ8N8V4 417 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 ZNF441Q8N8Z8 693 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 GOT1L1Q8NHS2 421 aaPredicted RBP9.33□□□□□ -0.92
USP3-216ENST00000559873 JADE3Q92613 823 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 TMEM125Q96AQ2 219 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 SLC35G5Q96KT7 338 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 C5orf34Q96MH7 638 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 VSTM2LQ96N03 204 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 RASL10BQ96S79 203 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 LMF2Q9BU23 707 aaKnown RBP9.33□□□□□ -0.92
USP3-216ENST00000559873 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.33□□□□□ -0.925e-7■■□□□ 12.5
USP3-216ENST00000559873 SLC25A18Q9H1K4 315 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 RAD21L1Q9H4I0 556 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 CXorf36Q9H7Y0 433 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 EQTNQ9NQ60 294 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 SAR1AQ9NR31 198 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 SIRT3Q9NTG7 399 aaPredicted RBP9.33□□□□□ -0.92
USP3-216ENST00000559873 HPF1Q9NWY4 346 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 NTMQ9P121 344 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 LEF1Q9UJU2 399 aaPredicted RBP9.33□□□□□ -0.92
USP3-216ENST00000559873 ERVK-11Q9UQG0 969 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 ARL2BPQ9Y2Y0 163 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 NDUFAF1Q9Y375 327 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 PCDHGB3Q9Y5G1 929 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms