RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 DCAF4L2Q8NA75 395 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 ZNF680Q8NEM1 530 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 OR6T1Q8NGN1 323 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 TBC1D20Q96BZ9 403 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 SCLYQ96I15 445 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 TEFMQ96QE5 360 aaKnown RBP10.71□□□□□ -0.69
LDLR-208ENST00000558518 THAP7Q9BT49 309 aaPredicted RBP10.71□□□□□ -0.69
LDLR-208ENST00000558518 TDP1Q9NUW8 608 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 OR6C2Q9NZP2 312 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 ZSWIM8A7E2V4 1837 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 PLXNB2O15031 1838 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 IQCMA0A1B0GVH7 501 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 GABRPO00591 440 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 SIGLEC5O15389 551 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 PDPK1O15530 556 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 RFPL3O75679 317 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 ALPPP05187 535 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 RB1P06400 928 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 CBSLP0DN79 551 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 FUT1P19526 365 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 STOMP27105 288 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 SHC1P29353 583 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 CBSP35520 551 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 AHRP35869 848 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 SIGLEC14Q08ET2 396 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 OR2T35Q8NGX2 323 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 PLD4Q96BZ4 506 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 SCRN2Q96FV2 425 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 DDX31Q9H8H2 851 aaKnown RBP10.71□□□□□ -0.69
LDLR-208ENST00000558518 PAK6Q9NQU5 681 aaPredicted RBP10.71□□□□□ -0.69
LDLR-208ENST00000558518 SPATA6Q9NWH7 488 aaPredicted RBP10.71□□□□□ -0.69
LDLR-208ENST00000558518 WSB2Q9NYS7 404 aaPredicted RBP10.71□□□□□ -0.69
LDLR-208ENST00000558518 MGAT4BQ9UQ53 548 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 TEX13CA0A0J9YWL9 993 aa10.71□□□□□ -0.7
LDLR-208ENST00000558518 CDK2AP1O14519 115 aa10.71□□□□□ -0.7
LDLR-208ENST00000558518 SLC22A5O76082 557 aa10.71□□□□□ -0.7
LDLR-208ENST00000558518 KELP23276 732 aa10.71□□□□□ -0.7
LDLR-208ENST00000558518 DNASE1P24855 282 aa10.71□□□□□ -0.7
LDLR-208ENST00000558518 PSMB5P28074 263 aa10.71□□□□□ -0.7
LDLR-208ENST00000558518 MORN1Q5T089 497 aa10.71□□□□□ -0.7
LDLR-208ENST00000558518 ZNF767PQ75MW2 155 aa10.71□□□□□ -0.7
LDLR-208ENST00000558518 CHST9Q7L1S5 443 aa10.71□□□□□ -0.7
LDLR-208ENST00000558518 ORAI1Q96D31 301 aa10.71□□□□□ -0.7
LDLR-208ENST00000558518 HYLS1Q96M11 299 aa10.71□□□□□ -0.7
LDLR-208ENST00000558518 BBS4Q96RK4 519 aa10.71□□□□□ -0.7
LDLR-208ENST00000558518 ZNF607Q96SK3 696 aa10.71□□□□□ -0.7
LDLR-208ENST00000558518 ISG20L2Q9H9L3 353 aaKnown RBP10.71□□□□□ -0.7
LDLR-208ENST00000558518 THSD1Q9NS62 852 aa10.71□□□□□ -0.7
LDLR-208ENST00000558518 IMP3Q9NV31 184 aaKnown RBP10.71□□□□□ -0.7
LDLR-208ENST00000558518 RASD1Q9Y272 281 aa10.71□□□□□ -0.7
LDLR-208ENST00000558518 ATG2BQ96BY7 2078 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 PATJQ8NI35 1801 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 TP53BP1Q12888 1972 aaPredicted RBP10.7□□□□□ -0.7
LDLR-208ENST00000558518 ATP6V1G2-DDX39BF2Z307 99 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 H7BY64 318 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 ARAFP10398 606 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 UBL4AP11441 157 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 SOX9P48436 509 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 ACLYP53396 1101 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 CLDN2P57739 230 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 PIP5KL1Q5T9C9 394 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 GRHL2Q6ISB3 625 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 RPTNQ6XPR3 784 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 SERPINA12Q8IW75 414 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 GPR135Q8IZ08 494 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 BOLLQ8N9W6 283 aaKnown RBP10.7□□□□□ -0.7
LDLR-208ENST00000558518 COQ8AQ8NI60 647 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 ZNF671Q8TAW3 534 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 CHTF18Q8WVB6 975 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 RFT1Q96AA3 541 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 SENP5Q96HI0 755 aaPredicted RBP10.7□□□□□ -0.7
LDLR-208ENST00000558518 PRAP1Q96NZ9 151 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 SLC38A2Q96QD8 506 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 TREX2Q9BQ50 279 aaPredicted RBP10.7□□□□□ -0.7
LDLR-208ENST00000558518 OR51I1Q9H343 314 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 MARCH5Q9NX47 278 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 MRPL39Q9NYK5 338 aaKnown RBP10.7□□□□□ -0.7
LDLR-208ENST00000558518 TAAR2Q9P1P5 351 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 REV1Q9UBZ9 1251 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 TAC3Q9UHF0 121 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 RABL2BQ9UNT1 228 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 LSM2Q9Y333 95 aaKnown RBP10.7□□□□□ -0.7
LDLR-208ENST00000558518 A0A1W2PRG6 482 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 A0A1W2PRU2 124 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 H7C4K7 107 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 SOCS6O14544 535 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 GYPBP06028 91 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 PPP2R1BP30154 601 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 SLC6A11P48066 632 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 PLK5Q496M5 336 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 GGTA1PQ4G0N0 100 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 LYPD4Q6UWN0 246 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 FTMTQ8N4E7 242 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 SLC43A3Q8NBI5 491 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 OR11H4Q8NGC9 324 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 OR51L1Q8NGJ5 315 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 MS4A7Q9GZW8 240 aaPredicted RBP10.7□□□□□ -0.7
LDLR-208ENST00000558518 OSGEPL1Q9H4B0 414 aa10.7□□□□□ -0.7
LDLR-208ENST00000558518 RGS17Q9UGC6 210 aaPredicted RBP10.7□□□□□ -0.7
LDLR-208ENST00000558518 YIPF1Q9Y548 306 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms