RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 DYRK1BQ9Y463 629 aa11.65□□□□□ -0.54
LDLR-205ENST00000557933 SH3D21A4FU49 640 aa11.64□□□□□ -0.55
LDLR-205ENST00000557933 HMGN4O00479 90 aa11.64□□□□□ -0.55
LDLR-205ENST00000557933 PLPP1O14494 284 aa11.64□□□□□ -0.55
LDLR-205ENST00000557933 KIAA0355O15063 1070 aa11.64□□□□□ -0.55
LDLR-205ENST00000557933 EFCAB14O75071 495 aa11.64□□□□□ -0.55
LDLR-205ENST00000557933 SLCO2B1O94956 709 aa11.64□□□□□ -0.55
LDLR-205ENST00000557933 TP53P04637 393 aaPredicted RBP11.64□□□□□ -0.55
LDLR-205ENST00000557933 CTSLP07711 333 aa11.64□□□□□ -0.55
LDLR-205ENST00000557933 ARSBP15848 533 aa11.64□□□□□ -0.55
LDLR-205ENST00000557933 RECQLP46063 649 aaPredicted RBP11.64□□□□□ -0.55
LDLR-205ENST00000557933 SLC9A3P48764 834 aa11.64□□□□□ -0.55
LDLR-205ENST00000557933 OR10A3P58181 314 aa11.64□□□□□ -0.55
LDLR-205ENST00000557933 TAP2Q03519 686 aa11.64□□□□□ -0.55
LDLR-205ENST00000557933 FCN2Q15485 313 aa11.64□□□□□ -0.55
LDLR-205ENST00000557933 XKRXQ6PP77 449 aa11.64□□□□□ -0.55
LDLR-205ENST00000557933 GDPD4Q6W3E5 623 aa11.64□□□□□ -0.55
LDLR-205ENST00000557933 RNF165Q6ZSG1 346 aa11.64□□□□□ -0.55
LDLR-205ENST00000557933 NPAS4Q8IUM7 802 aa11.64□□□□□ -0.55
LDLR-205ENST00000557933 SIMC1Q8NDZ2 872 aa11.64□□□□□ -0.55
LDLR-205ENST00000557933 NEIL3Q8TAT5 605 aa11.64□□□□□ -0.55
LDLR-205ENST00000557933 C16orf58Q96GQ5 468 aa11.64□□□□□ -0.55
LDLR-205ENST00000557933 MS4A3Q96HJ5 214 aa11.64□□□□□ -0.55
LDLR-205ENST00000557933 KLHL1Q9NR64 748 aa11.64□□□□□ -0.55
LDLR-205ENST00000557933 LSM7Q9UK45 103 aaKnown RBP11.64□□□□□ -0.55
LDLR-205ENST00000557933 ZFR2Q9UPR6 939 aaKnown RBP11.64□□□□□ -0.55
LDLR-205ENST00000557933 NR2F6P10588 404 aa11.64□□□□□ -0.55
LDLR-205ENST00000557933 ZNF250P15622 560 aa11.64□□□□□ -0.55
LDLR-205ENST00000557933 NNMTP40261 264 aa11.64□□□□□ -0.55
LDLR-205ENST00000557933 GZMKP49863 264 aa11.64□□□□□ -0.55
LDLR-205ENST00000557933 PROKR2Q8NFJ6 384 aa11.64□□□□□ -0.55
LDLR-205ENST00000557933 HMGB4Q8WW32 186 aa11.64□□□□□ -0.55
LDLR-205ENST00000557933 FOPNLQ96NB1 174 aa11.64□□□□□ -0.55
LDLR-205ENST00000557933 GPR55Q9Y2T6 319 aaPredicted RBP11.64□□□□□ -0.55
LDLR-205ENST00000557933 ARID1AO14497 2285 aa11.64□□□□□ -0.55
LDLR-205ENST00000557933 ATG13O75143 517 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 C1orf105O95561 183 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 RAB36O95755 333 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 ADAP00813 363 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 IFNA14P01570 189 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 MRPL3P09001 348 aaKnown RBP11.63□□□□□ -0.55
LDLR-205ENST00000557933 ELFN1P0C7U0 828 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 TBXA2RP21731 343 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 MLLT11Q13015 90 aaPredicted RBP11.63□□□□□ -0.55
LDLR-205ENST00000557933 PIP5KL1Q5T9C9 394 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 PXDC1Q5TGL8 231 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 SIGIRRQ6IA17 410 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 CNKSR3Q6P9H4 555 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 TRIM69Q86WT6 500 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 IZUMO1Q8IYV9 350 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 CHCHD4Q8N4Q1 142 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 SETD6Q8TBK2 473 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 TCEAL4Q96EI5 215 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 OR51I1Q9H343 314 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 IL21Q9HBE4 155 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 MRPL17Q9NRX2 175 aaKnown RBP11.63□□□□□ -0.55
LDLR-205ENST00000557933 WSB2Q9NYS7 404 aaPredicted RBP11.63□□□□□ -0.55
LDLR-205ENST00000557933 A4GNTQ9UNA3 340 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 INSL5Q9Y5Q6 135 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 SCN5AQ14524 2016 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 SLC30A4O14863 429 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 ARHGEF9O43307 516 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 EEF1E1O43324 174 aaKnown RBP11.63□□□□□ -0.55
LDLR-205ENST00000557933 TMPRSS11DO60235 418 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 LZTS3O60299 673 aaPredicted RBP11.63□□□□□ -0.55
LDLR-205ENST00000557933 PDE9AO76083 593 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 ARHGEF15O94989 841 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 FCER2P06734 321 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 LIMS3P0CW19 117 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 LIMS4P0CW20 117 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 MPC1LP0DKB6 136 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 TFPIP10646 304 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 GNSP15586 552 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 ELK1P19419 428 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 PXNP49023 591 aaPredicted RBP11.63□□□□□ -0.55
LDLR-205ENST00000557933 WNT4P56705 351 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 WDR5P61964 334 aaKnown RBP11.63□□□□□ -0.55
LDLR-205ENST00000557933 ILKQ13418 452 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 RPTNQ6XPR3 784 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 ZNF730Q6ZMV8 503 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 DDX53Q86TM3 631 aaKnown RBP11.63□□□□□ -0.55
LDLR-205ENST00000557933 SHISA5Q8N114 240 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 OR51G2Q8NGK0 314 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 ORAI1Q96D31 301 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 IGSF21Q96ID5 467 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 FCRL4Q96PJ5 515 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 C17orf62Q9BQA9 187 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 TMEM175Q9BSA9 504 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 MRPL9Q9BYD2 267 aaKnown RBP11.63□□□□□ -0.55
LDLR-205ENST00000557933 ZCCHC3Q9NUD5 404 aaKnown RBP11.63□□□□□ -0.55
LDLR-205ENST00000557933 NUDT15Q9NV35 164 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 NPAP1Q9NZP6 1156 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 ZNF624Q9P2J8 865 aaPredicted RBP11.63□□□□□ -0.55
LDLR-205ENST00000557933 DKK3Q9UBP4 350 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 EXTL2Q9UBQ6 330 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 DOCK9Q9BZ29 2069 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 PLXNB3Q9ULL4 1909 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 DSPPQ9NZW4 1301 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 IQCMA0A1B0GVH7 501 aa11.63□□□□□ -0.55
LDLR-205ENST00000557933 INMT-MINDY4F8WBC2 141 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms