RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 SMC6Q96SB8 1091 aa14.73□□□□□ -0.05
CCDC88C-209ENST00000554872 DOHHQ9BU89 302 aa14.73□□□□□ -0.05
CCDC88C-209ENST00000554872 ITPAQ9BY32 194 aa14.73□□□□□ -0.05
CCDC88C-209ENST00000554872 DEFB127Q9H1M4 99 aa14.73□□□□□ -0.05
CCDC88C-209ENST00000554872 B4GALT7Q9UBV7 327 aa14.73□□□□□ -0.05
CCDC88C-209ENST00000554872 PCNX1Q96RV3 2341 aa14.73□□□□□ -0.05
CCDC88C-209ENST00000554872 EML6Q6ZMW3 1958 aa14.73□□□□□ -0.05
CCDC88C-209ENST00000554872 TLDC2A0PJX2 215 aa14.72□□□□□ -0.05
CCDC88C-209ENST00000554872 FIGNL2A6NMB9 653 aa14.72□□□□□ -0.05
CCDC88C-209ENST00000554872 AZIN1O14977 448 aa14.72□□□□□ -0.05
CCDC88C-209ENST00000554872 ABCB7O75027 752 aa14.72□□□□□ -0.05
CCDC88C-209ENST00000554872 CLDN14O95500 239 aa14.72□□□□□ -0.05
CCDC88C-209ENST00000554872 TUBBP07437 444 aa14.72□□□□□ -0.05
CCDC88C-209ENST00000554872 ABCB1P08183 1280 aaPredicted RBP14.72□□□□□ -0.05
CCDC88C-209ENST00000554872 HOXD4P09016 255 aaPredicted RBP14.72□□□□□ -0.05
CCDC88C-209ENST00000554872 PCSK2P16519 638 aa14.72□□□□□ -0.05
CCDC88C-209ENST00000554872 FBXW4P57775 412 aa14.72□□□□□ -0.05
CCDC88C-209ENST00000554872 EXOSC7Q15024 291 aaKnown RBP14.72□□□□□ -0.05
CCDC88C-209ENST00000554872 LTB4RQ15722 352 aa14.72□□□□□ -0.05
CCDC88C-209ENST00000554872 TRMT12Q53H54 448 aaKnown RBP14.72□□□□□ -0.05
CCDC88C-209ENST00000554872 PRAMEF20Q5VT98 475 aa14.72□□□□□ -0.05
CCDC88C-209ENST00000554872 KANK2Q63ZY3 851 aa14.72□□□□□ -0.05
CCDC88C-209ENST00000554872 NOXRED1Q6NXP6 359 aa14.72□□□□□ -0.05
CCDC88C-209ENST00000554872 SCIMPQ6UWF3 145 aa14.72□□□□□ -0.05
CCDC88C-209ENST00000554872 NUP54Q7Z3B4 507 aa14.72□□□□□ -0.05
CCDC88C-209ENST00000554872 SRRM1Q8IYB3 904 aaKnown RBP14.72□□□□□ -0.05
CCDC88C-209ENST00000554872 FAM9CQ8IZT9 166 aa14.72□□□□□ -0.05
CCDC88C-209ENST00000554872 ACBD4Q8NC06 268 aa14.72□□□□□ -0.05
CCDC88C-209ENST00000554872 ADCY4Q8NFM4 1077 aa14.72□□□□□ -0.05
CCDC88C-209ENST00000554872 OR52R1Q8NGF1 315 aa14.72□□□□□ -0.05
CCDC88C-209ENST00000554872 DIO2Q92813 273 aa14.72□□□□□ -0.05
CCDC88C-209ENST00000554872 HGDQ93099 445 aa14.72□□□□□ -0.05
CCDC88C-209ENST00000554872 TMEM41AQ96HV5 264 aa14.72□□□□□ -0.05
CCDC88C-209ENST00000554872 VSTM2LQ96N03 204 aa14.72□□□□□ -0.05
CCDC88C-209ENST00000554872 CCT7Q99832 543 aa14.72□□□□□ -0.05
CCDC88C-209ENST00000554872 EBPLQ9BY08 206 aa14.72□□□□□ -0.05
CCDC88C-209ENST00000554872 UBQLN3Q9H347 655 aa14.72□□□□□ -0.05
CCDC88C-209ENST00000554872 RAB21Q9UL25 225 aa14.72□□□□□ -0.05
CCDC88C-209ENST00000554872 GPR55Q9Y2T6 319 aaPredicted RBP14.72□□□□□ -0.05
CCDC88C-209ENST00000554872 HRH3Q9Y5N1 445 aa14.72□□□□□ -0.05
CCDC88C-209ENST00000554872 LIPGQ9Y5X9 500 aa14.72□□□□□ -0.05
CCDC88C-209ENST00000554872 DNAJC13O75165 2243 aa14.72□□□□□ -0.05
CCDC88C-209ENST00000554872 TRGV5A0A0B4J1U4 118 aa14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 OR6C70A6NIJ9 312 aa14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 PLOD2O00469 737 aa14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 RGS14O43566 566 aa14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 TBX19O60806 448 aa14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 WDR1O75083 606 aa14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 CHEK2O96017 543 aa14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 CELA3AP09093 270 aa14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 RFPL3SP0C7P2 107 aa14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 ELAVL4P26378 380 aaKnown RBP14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 HTR1EP28566 365 aa14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 ALDH3A1P30838 453 aa14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 PTGER4P35408 488 aa14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 CASP3P42574 277 aa14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 MAN2A2P49641 1150 aa14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 ERCC6LQ2NKX8 1250 aa14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 FNDC7Q5VTL7 733 aa14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 TMEM198Q66K66 360 aa14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 SP5Q6BEB4 398 aaPredicted RBP14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 ACAD11Q709F0 780 aa14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 CCDC116Q8IYX3 515 aa14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 MARVELD2Q8N4S9 558 aa14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 OR9A2Q8NGT5 310 aa14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 OR6Y1Q8NGX8 325 aa14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 RNF138Q8WVD3 245 aa14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 EXOSC8Q96B26 276 aaKnown RBP14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 SARAFQ96BY9 339 aa14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 RILPQ96NA2 401 aa14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 FAM111AQ96PZ2 611 aa14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 RUBCNLQ9H714 662 aa14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 C1orf109Q9NX04 203 aa14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 BCAP29Q9UHQ4 241 aa14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 EXO1Q9UQ84 846 aaKnown RBP14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 C15orf41Q9Y2V0 281 aa14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 TMED5Q9Y3A6 229 aa14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 DNAJC15Q9Y5T4 150 aa14.71□□□□□ -0.05
CCDC88C-209ENST00000554872 ATP6AP2A0A1C7CYW4 349 aa14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 ZNHIT1O43257 154 aa14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 TYROBPO43914 113 aa14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 ATP6AP2O75787 350 aa14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 PDE9AO76083 593 aa14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 PSMG1O95456 288 aa14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 HPNP05981 417 aa14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 CT45A8P0DMV1 189 aa14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 CT45A9P0DMV2 189 aa14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 ENDOUP21128 410 aaKnown RBP14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 ACVR2AP27037 513 aa14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 MRPS35P82673 323 aaKnown RBP14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 BTKQ06187 659 aa14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 C2orf80Q0P641 193 aa14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 PLCXD2Q0VAA5 305 aa14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 GXYLT1Q4G148 440 aa14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 CT45A2Q5DJT8 189 aa14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 CLEC6AQ6EIG7 209 aa14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 SLC30A6Q6NXT4 461 aa14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 FAM180BQ6P0A1 224 aa14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 TMEM64Q6YI46 380 aa14.7□□□□□ -0.06
CCDC88C-209ENST00000554872 Q6ZSR9 355 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms