RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 CCSMST1Q4G0I0 132 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 FILIP1LQ4L180 1135 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 CMPK2Q5EBM0 449 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 ANKRD20A2Q5SQ80 823 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 ANKRD20A1Q5TYW2 823 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 ANKRD20A3Q5VUR7 823 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 TMEM211Q6ICI0 200 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 RGS7BPQ6MZT1 257 aaPredicted RBP3.29□□□□□ -1.88
LIMA1-206ENST00000550611 LRRC8BQ6P9F7 803 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 SASS6Q6UVJ0 657 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 UNC5DQ6UXZ4 953 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 LANCL3Q6ZV70 420 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 BBS12Q6ZW61 710 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 ZNF534Q76KX8 674 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 CAMKMTQ7Z624 323 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 ANKRD37Q7Z713 158 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 PAQR7Q86WK9 346 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 CCDC71Q8IV32 467 aaPredicted RBP3.29□□□□□ -1.88
LIMA1-206ENST00000550611 DCUN1D3Q8IWE4 304 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 SPARTQ8N0X7 666 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 EID3Q8N140 333 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 RPRMLQ8N4K4 120 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 TMEM178AQ8NBL3 297 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 PLPP5Q8NEB5 264 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 OR13J1Q8NGT2 312 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 LKAAEAR1Q8TD35 194 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 ELP5Q8TE02 316 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 TMEM171Q8WVE6 324 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 ASZ1Q8WWH4 475 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 CTNNBL1Q8WYA6 563 aaPredicted RBP3.29□□□□□ -1.88
LIMA1-206ENST00000550611 P3H4Q92791 437 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 RITA1Q96K30 269 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 TBL1YQ9BQ87 522 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 UTP23Q9BRU9 249 aaKnown RBP3.29□□□□□ -1.88
LIMA1-206ENST00000550611 DPH7Q9BTV6 452 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 CARD6Q9BX69 1037 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 FSD1LQ9BXM9 530 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 VN1R1Q9GZP7 353 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 MMP25Q9NPA2 562 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 OBP2BQ9NPH6 170 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 KCNJ16Q9NPI9 418 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 KLHL1Q9NR64 748 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 RASSF1Q9NS23 344 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 CHMP5Q9NZZ3 219 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 KLHL13Q9P2N7 655 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 CIDEBQ9UHD4 219 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 TEKT2Q9UIF3 430 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 SH2B3Q9UQQ2 575 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 L3MBTL1Q9Y468 752 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 FAM169AQ9Y6X4 670 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 GTF3C1Q12789 2109 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 CMYA5Q8N3K9 4069 aa3.29□□□□□ -1.88
LIMA1-206ENST00000550611 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.28□□□□□ -1.88
LIMA1-206ENST00000550611 INTS1Q8N201 2190 aaKnown RBP3.28□□□□□ -1.88
LIMA1-206ENST00000550611 CHD3Q12873 2000 aaKnown RBP3.28□□□□□ -1.88
LIMA1-206ENST00000550611 CCDC88CQ9P219 2028 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 KCNE1BA0A087WTH5 132 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 A0A0A6YYC8 382 aaPredicted RBP3.28□□□□□ -1.88
LIMA1-206ENST00000550611 CCDC162PA2VCL2 907 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 KRT87PA6NCN2 255 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 OR2W5A6NFC9 320 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 TRIM64A6NGJ6 449 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 OR51F1A6NGY5 319 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 TRIM64BA6NI03 449 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 CLCA1A8K7I4 914 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 GABRR3A8MPY1 467 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 IQCF5A8MTL0 148 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 SMTNL1A8MU46 457 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 H0YIG0 161 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 I3L1I5 382 aaPredicted RBP3.28□□□□□ -1.88
LIMA1-206ENST00000550611 APOC4-APOC2K7ER74 178 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 P2RX6O15547 441 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 PRPF4O43172 522 aaKnown RBP eCLIP3.28□□□□□ -1.88
LIMA1-206ENST00000550611 PSTPIP1O43586 416 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 NSA2O95478 260 aaKnown RBP3.28□□□□□ -1.88
LIMA1-206ENST00000550611 TOMM40O96008 361 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 APOC2P02655 101 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 CSTBP04080 98 aaKnown RBP3.28□□□□□ -1.88
LIMA1-206ENST00000550611 RPN2P04844 631 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 GYPCP04921 128 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 EIF2S1P05198 315 aaKnown RBP3.28□□□□□ -1.88
LIMA1-206ENST00000550611 TFEBP19484 476 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 MSNP26038 577 aaKnown RBP3.28□□□□□ -1.88
LIMA1-206ENST00000550611 AGTR2P50052 363 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 HADHBP55084 474 aaKnown RBP3.28□□□□□ -1.88
LIMA1-206ENST00000550611 NUP107P57740 925 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 MLF1P58340 268 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 RHAGQ02094 409 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 PRDX1Q06830 199 aaKnown RBP3.28□□□□□ -1.88
LIMA1-206ENST00000550611 HSPA14Q0VDF9 509 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 PMPCAQ10713 525 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 PTK6Q13882 451 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 E2F2Q14209 437 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 PRPSAP1Q14558 356 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 EXT1Q16394 746 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 PFKFB4Q16877 469 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 TIGD6Q17RP2 521 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 PARP6Q2NL67 630 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 BTBD16Q32M84 506 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 GXYLT1Q4G148 440 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms