RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 PAQR3Q6TCH7 311 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 TMIGD1Q6UXZ0 262 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 CHMP1BQ7LBR1 199 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 CTAGE4Q8IX94 777 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 PLD6Q8N2A8 252 aaKnown RBP13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 FNDC9Q8TBE3 224 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 LINGO1Q96FE5 620 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 SFXN2Q96NB2 322 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 NODALQ96S42 347 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 NDNQ99608 321 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 DDX47Q9H0S4 455 aaKnown RBP13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 ACTR8Q9H981 624 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 RNF122Q9H9V4 155 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 LYRM4Q9HD34 91 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 TRMT6Q9UJA5 497 aaKnown RBP13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 SOX13Q9UN79 622 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 EXO1Q9UQ84 846 aaKnown RBP13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 CADP27708 2225 aa13.79□□□□□ -0.2
CLSTN3-216ENST00000545663 DYRK3O43781 588 aa13.78□□□□□ -0.2
CLSTN3-216ENST00000545663 RAMP1O60894 148 aa13.78□□□□□ -0.2
CLSTN3-216ENST00000545663 PRKRAO75569 313 aaKnown RBP13.78□□□□□ -0.2
CLSTN3-216ENST00000545663 CBR3O75828 277 aa13.78□□□□□ -0.2
CLSTN3-216ENST00000545663 ABCB1P08183 1280 aaPredicted RBP13.78□□□□□ -0.2
CLSTN3-216ENST00000545663 SSTR4P31391 388 aa13.78□□□□□ -0.2
CLSTN3-216ENST00000545663 SLBPQ14493 270 aaKnown RBP eCLIP13.78□□□□□ -0.2
CLSTN3-216ENST00000545663 NRF1Q16656 503 aa13.78□□□□□ -0.2
CLSTN3-216ENST00000545663 AAGABQ6PD74 315 aa13.78□□□□□ -0.2
CLSTN3-216ENST00000545663 DNAJC14Q6Y2X3 702 aaPredicted RBP13.78□□□□□ -0.2
CLSTN3-216ENST00000545663 GPSM1Q86YR5 675 aa13.78□□□□□ -0.2
CLSTN3-216ENST00000545663 MYO1HQ8N1T3 1032 aa13.78□□□□□ -0.2
CLSTN3-216ENST00000545663 BANPQ8N9N5 519 aa13.78□□□□□ -0.2
CLSTN3-216ENST00000545663 BBOF1Q8ND07 529 aa13.78□□□□□ -0.2
CLSTN3-216ENST00000545663 C10orf105Q8TEF2 133 aa13.78□□□□□ -0.2
CLSTN3-216ENST00000545663 FAM168AQ92567 244 aa13.78□□□□□ -0.2
CLSTN3-216ENST00000545663 TP53INP1Q96A56 240 aa13.78□□□□□ -0.2
CLSTN3-216ENST00000545663 RHBDF1Q96CC6 855 aa13.78□□□□□ -0.2
CLSTN3-216ENST00000545663 TRIM2Q9C040 744 aa13.78□□□□□ -0.2
CLSTN3-216ENST00000545663 PTBP2Q9UKA9 531 aaKnown RBP13.78□□□□□ -0.2
CLSTN3-216ENST00000545663 FBXL2Q9UKC9 423 aa13.78□□□□□ -0.2
CLSTN3-216ENST00000545663 CCDC166P0CW27 439 aa13.77□□□□□ -0.21
CLSTN3-216ENST00000545663 SLC1A2P43004 574 aa13.77□□□□□ -0.21
CLSTN3-216ENST00000545663 SUCLG1P53597 346 aaKnown RBP13.77□□□□□ -0.21
CLSTN3-216ENST00000545663 RPS13P62277 151 aaKnown RBP13.77□□□□□ -0.21
CLSTN3-216ENST00000545663 TSC22D1Q15714 1073 aa13.77□□□□□ -0.21
CLSTN3-216ENST00000545663 TTC27Q6P3X3 843 aa13.77□□□□□ -0.21
CLSTN3-216ENST00000545663 SLCO4C1Q6ZQN7 724 aa13.77□□□□□ -0.21
CLSTN3-216ENST00000545663 FAM214BQ7L5A3 538 aa13.77□□□□□ -0.21
CLSTN3-216ENST00000545663 DTX2Q86UW9 622 aa13.77□□□□□ -0.21
CLSTN3-216ENST00000545663 KLHL7Q8IXQ5 586 aa13.77□□□□□ -0.21
CLSTN3-216ENST00000545663 ZNF619Q8N2I2 560 aa13.77□□□□□ -0.21
CLSTN3-216ENST00000545663 ACOT4Q8N9L9 421 aa13.77□□□□□ -0.21
CLSTN3-216ENST00000545663 GCDHQ92947 438 aaPredicted RBP13.77□□□□□ -0.21
CLSTN3-216ENST00000545663 S100PBPQ96BU1 408 aa13.77□□□□□ -0.21
CLSTN3-216ENST00000545663 TACO1Q9BSH4 297 aaKnown RBP13.77□□□□□ -0.21
CLSTN3-216ENST00000545663 PRR14Q9BWN1 585 aa13.77□□□□□ -0.21
CLSTN3-216ENST00000545663 PINK1Q9BXM7 581 aa13.77□□□□□ -0.21
CLSTN3-216ENST00000545663 CACNG6Q9BXT2 260 aa13.77□□□□□ -0.21
CLSTN3-216ENST00000545663 RAB17Q9H0T7 212 aa13.77□□□□□ -0.21
CLSTN3-216ENST00000545663 PLSCR4Q9NRQ2 329 aa13.77□□□□□ -0.21
CLSTN3-216ENST00000545663 SNX15Q9NRS6 342 aa13.77□□□□□ -0.21
CLSTN3-216ENST00000545663 CISD1Q9NZ45 108 aaKnown RBP13.77□□□□□ -0.21
CLSTN3-216ENST00000545663 IKZF3Q9UKT9 509 aa13.77□□□□□ -0.21
CLSTN3-216ENST00000545663 CLEC4AQ9UMR7 237 aa13.77□□□□□ -0.21
CLSTN3-216ENST00000545663 OR6C76A6NM76 312 aa13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 B4DXG7 233 aa13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 ZIC3O60481 467 aa13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 CLEC3AO75596 197 aa13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 LY6HO94772 140 aa13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 AQP8O94778 261 aa13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 TGFAP01135 160 aa13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 C1GALT1C1LP0DN25 315 aa13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 ALOX15P16050 662 aaPredicted RBP13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 TPSB2P20231 275 aa13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 CPN2P22792 545 aa13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 ATP5A1P25705 553 aaKnown RBP13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 CNTFP26441 200 aa13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 ABCD3P28288 659 aa13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 MAGEA6P43360 314 aa13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 RGS4P49798 205 aa13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 C21orf58P58505 322 aa13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 B3GALT5-AS1P59052 145 aa13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 RPP38P78345 283 aaKnown RBP13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 BASP1P80723 227 aaKnown RBP13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 PLIN5Q00G26 463 aa13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 BSPH1Q075Z2 132 aa13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 DOC2AQ14183 400 aa13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 GGTLC2Q14390 218 aa13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 TPSAB1Q15661 275 aa13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 C18orf21Q32NC0 220 aaPredicted RBP13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 GLE1Q53GS7 698 aaKnown RBP13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 OR5M10Q6IEU7 315 aa13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 CASC4Q6P4E1 433 aa13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 SEMA6DQ8NFY4 1073 aa13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 RIT1Q92963 219 aa13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 HGDQ93099 445 aa13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 ADIPOR1Q96A54 375 aa13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 ADAD1Q96M93 576 aaKnown RBP13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 OSBPL11Q9BXB4 747 aa13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 OCEL1Q9H607 264 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms