RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 LEF1Q9UJU2 399 aaPredicted RBP11.3□□□□□ -0.6
DDX55-210ENST00000543016 NDUFAF1Q9Y375 327 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 HEMK1Q9Y5R4 338 aaPredicted RBP11.3□□□□□ -0.6
DDX55-210ENST00000543016 EPG5Q9HCE0 2579 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 ASPMQ8IZT6 3477 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 CACNA1BQ00975 2339 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 FRYQ5TBA9 3013 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 A6NL46 340 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 DUXAA6NLW8 204 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 NR5A2O00482 541 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 NDUFAB1O14561 156 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 ANGPT2O15123 496 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 TO15178 435 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 CPSF4O95639 269 aaKnown RBP11.29□□□□□ -0.6
DDX55-210ENST00000543016 KRT75O95678 551 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 NPPAP01160 153 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 CELA2AP08217 269 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 TRHRP34981 398 aaPredicted RBP11.29□□□□□ -0.6
DDX55-210ENST00000543016 CASRP41180 1078 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 CDK9P50750 372 aaKnown RBP11.29□□□□□ -0.6
DDX55-210ENST00000543016 ANXA11P50995 505 aaKnown RBP11.29□□□□□ -0.6
DDX55-210ENST00000543016 NRG3P56975 720 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 KCNAB2Q13303 367 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 TP53BP2Q13625 1128 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 TLR1Q15399 786 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 TIGD2Q4W5G0 525 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 PIGGQ5H8A4 983 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 OPN5Q6U736 354 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 MTDHQ86UE4 582 aaKnown RBP11.29□□□□□ -0.6
DDX55-210ENST00000543016 ANKRD46Q86W74 232 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 C9orf40Q8IXQ3 194 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 CLECL1Q8IZS7 167 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 DPP10Q8N608 796 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 HORMAD2Q8N7B1 307 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 ZNF321PQ8N8H1 164 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 ZNF441Q8N8Z8 693 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 RP9Q8TA86 221 aaKnown RBP11.29□□□□□ -0.6
DDX55-210ENST00000543016 NUDT8Q8WV74 236 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 HAS2Q92819 552 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 HOXB13Q92826 284 aaPredicted RBP11.29□□□□□ -0.6
DDX55-210ENST00000543016 ADIPOR1Q96A54 375 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 LCORQ96JN0 433 aaPredicted RBP11.29□□□□□ -0.6
DDX55-210ENST00000543016 VSTM2LQ96N03 204 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 BTBD9Q96Q07 612 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 LRRC37BQ96QE4 947 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 LMF2Q9BU23 707 aaKnown RBP11.29□□□□□ -0.6
DDX55-210ENST00000543016 MYLK2Q9H1R3 596 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 CDCP1Q9H5V8 836 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 CXorf36Q9H7Y0 433 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 SLC52A3Q9NQ40 469 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 SERHLQ9NQF3 203 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 ZCCHC3Q9NUD5 404 aaKnown RBP11.29□□□□□ -0.6
DDX55-210ENST00000543016 MRTO4Q9UKD2 239 aaKnown RBP11.29□□□□□ -0.6
DDX55-210ENST00000543016 FAF1Q9UNN5 650 aaPredicted RBP11.29□□□□□ -0.6
DDX55-210ENST00000543016 GPR55Q9Y2T6 319 aaPredicted RBP11.29□□□□□ -0.6
DDX55-210ENST00000543016 PCDHGB3Q9Y5G1 929 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 SNX8Q9Y5X2 465 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 USP24Q9UPU5 2620 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 CNTRLQ7Z7A1 2325 aa11.29□□□□□ -0.6
DDX55-210ENST00000543016 DMXL2Q8TDJ6 3036 aa11.28□□□□□ -0.6
DDX55-210ENST00000543016 PCSK5Q92824 1860 aa11.28□□□□□ -0.6
DDX55-210ENST00000543016 A0A096LPI6 279 aa11.28□□□□□ -0.6
DDX55-210ENST00000543016 FRG2CA6NGY1 282 aa11.28□□□□□ -0.6
DDX55-210ENST00000543016 ANP32DO95626 131 aa11.28□□□□□ -0.6
DDX55-210ENST00000543016 AGR2O95994 175 aa11.28□□□□□ -0.6
DDX55-210ENST00000543016 ABCB1P08183 1280 aaPredicted RBP11.28□□□□□ -0.6
DDX55-210ENST00000543016 PPIBP23284 216 aaKnown RBP11.28□□□□□ -0.6
DDX55-210ENST00000543016 PRDX6P30041 224 aa11.28□□□□□ -0.6
DDX55-210ENST00000543016 TMED10P49755 219 aaKnown RBP11.28□□□□□ -0.6
DDX55-210ENST00000543016 SSR4P51571 173 aa11.28□□□□□ -0.6
DDX55-210ENST00000543016 MRPS22P82650 360 aaKnown RBP11.28□□□□□ -0.6
DDX55-210ENST00000543016 SF3A3Q12874 501 aaKnown RBP eCLIP11.28□□□□□ -0.6
DDX55-210ENST00000543016 DUSP8Q13202 625 aa11.28□□□□□ -0.6
DDX55-210ENST00000543016 CYLC2Q14093 348 aaPredicted RBP11.28□□□□□ -0.6
DDX55-210ENST00000543016 UBAP2LQ14157 1087 aaKnown RBP11.28□□□□□ -0.6
DDX55-210ENST00000543016 EXOSC7Q15024 291 aaKnown RBP11.28□□□□□ -0.6
DDX55-210ENST00000543016 LINC00303Q3SY05 128 aa11.28□□□□□ -0.6
DDX55-210ENST00000543016 CYP27C1Q4G0S4 372 aa11.28□□□□□ -0.6
DDX55-210ENST00000543016 C6orf10Q5SRN2 563 aa11.28□□□□□ -0.6
DDX55-210ENST00000543016 LRIF1Q5T3J3 769 aa11.28□□□□□ -0.6
DDX55-210ENST00000543016 FAM91A1Q658Y4 838 aa11.28□□□□□ -0.6
DDX55-210ENST00000543016 ZNF621Q6ZSS3 439 aa11.28□□□□□ -0.6
DDX55-210ENST00000543016 ZADH2Q8N4Q0 377 aa11.28□□□□□ -0.6
DDX55-210ENST00000543016 SIRT6Q8N6T7 355 aa11.28□□□□□ -0.6
DDX55-210ENST00000543016 PCYOX1LQ8NBM8 494 aa11.28□□□□□ -0.6
DDX55-210ENST00000543016 C9orf43Q8TAL5 461 aaPredicted RBP11.28□□□□□ -0.6
DDX55-210ENST00000543016 MIPOL1Q8TD10 442 aa11.28□□□□□ -0.6
DDX55-210ENST00000543016 BCAS4Q8TDM0 211 aa11.28□□□□□ -0.6
DDX55-210ENST00000543016 GTF2H4Q92759 462 aa11.28□□□□□ -0.6
DDX55-210ENST00000543016 VPS33AQ96AX1 596 aa11.28□□□□□ -0.6
DDX55-210ENST00000543016 CMTM5Q96DZ9 223 aa11.28□□□□□ -0.6
DDX55-210ENST00000543016 NEURL3Q96EH8 262 aa11.28□□□□□ -0.6
DDX55-210ENST00000543016 ABHD17AQ96GS6 310 aa11.28□□□□□ -0.6
DDX55-210ENST00000543016 SGCZQ96LD1 299 aa11.28□□□□□ -0.6
DDX55-210ENST00000543016 GAL3ST4Q96RP7 486 aa11.28□□□□□ -0.6
DDX55-210ENST00000543016 STACQ99469 402 aa11.28□□□□□ -0.6
DDX55-210ENST00000543016 RAD21L1Q9H4I0 556 aa11.28□□□□□ -0.6
DDX55-210ENST00000543016 TRIM45Q9H8W5 580 aaPredicted RBP11.28□□□□□ -0.6
DDX55-210ENST00000543016 FOLH1BQ9HBA9 442 aa11.28□□□□□ -0.6
DDX55-210ENST00000543016 DUSP22Q9NRW4 184 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms