RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, human

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-209	ENST00000540747	DESI1	Q6ICB0	168 aa		6.63	□□□□□ -1.35
YBX3-209	ENST00000540747	ZNF572	Q7Z3I7	529 aa	Predicted RBP	6.63	□□□□□ -1.35
YBX3-209	ENST00000540747	YTHDF3	Q7Z739	585 aa	Known RBP	6.63	□□□□□ -1.35
YBX3-209	ENST00000540747	LUZP2	Q86TE4	346 aa		6.63	□□□□□ -1.35
YBX3-209	ENST00000540747	ISCA2	Q86U28	154 aa		6.63	□□□□□ -1.35
YBX3-209	ENST00000540747	YRDC	Q86U90	279 aa	Known RBP	6.63	□□□□□ -1.35
YBX3-209	ENST00000540747	PACS2	Q86VP3	889 aa		6.63	□□□□□ -1.35
YBX3-209	ENST00000540747	CREG2	Q8IUH2	290 aa		6.63	□□□□□ -1.35
YBX3-209	ENST00000540747	ANKMY2	Q8IV38	441 aa		6.63	□□□□□ -1.35
YBX3-209	ENST00000540747	GALNT12	Q8IXK2	581 aa		6.63	□□□□□ -1.35
YBX3-209	ENST00000540747	IFT20	Q8IY31	132 aa		6.63	□□□□□ -1.35
YBX3-209	ENST00000540747	WDSUB1	Q8N9V3	476 aa		6.63	□□□□□ -1.35
YBX3-209	ENST00000540747	FBXO36	Q8NEA4	188 aa		6.63	□□□□□ -1.35
YBX3-209	ENST00000540747	SPATA4	Q8NEY3	305 aa		6.63	□□□□□ -1.35
YBX3-209	ENST00000540747	NANOS1	Q8WY41	292 aa	Known RBP	6.63	□□□□□ -1.35
YBX3-209	ENST00000540747	PIGT	Q969N2	578 aa		6.63	□□□□□ -1.35
YBX3-209	ENST00000540747	INTS12	Q96CB8	462 aa	Known RBP	6.63	□□□□□ -1.35
YBX3-209	ENST00000540747	WFIKKN1	Q96NZ8	548 aa		6.63	□□□□□ -1.35
YBX3-209	ENST00000540747	HS3ST6	Q96QI5	342 aa		6.63	□□□□□ -1.35
YBX3-209	ENST00000540747	NODAL	Q96S42	347 aa		6.63	□□□□□ -1.35
YBX3-209	ENST00000540747	KRT12	Q99456	494 aa		6.63	□□□□□ -1.35
YBX3-209	ENST00000540747	BDH2	Q9BUT1	245 aa		6.63	□□□□□ -1.35
YBX3-209	ENST00000540747	NXF5	Q9H1B4	397 aa	Known RBP	6.63	□□□□□ -1.35
YBX3-209	ENST00000540747	LYAR	Q9NX58	379 aa	Known RBP	6.63	□□□□□ -1.35
YBX3-209	ENST00000540747	NSMCE4A	Q9NXX6	385 aa		6.63	□□□□□ -1.35
YBX3-209	ENST00000540747	NUDT4	Q9NZJ9	180 aa		6.63	□□□□□ -1.35
YBX3-209	ENST00000540747	C6orf203	Q9P0P8	240 aa	Predicted RBP	6.63	□□□□□ -1.35
YBX3-209	ENST00000540747	ADGRE2	Q9UHX3	823 aa		6.63	□□□□□ -1.35
YBX3-209	ENST00000540747	ZNF639	Q9UID6	485 aa		6.63	□□□□□ -1.35
YBX3-209	ENST00000540747	PACSIN3	Q9UKS6	424 aa		6.63	□□□□□ -1.35
YBX3-209	ENST00000540747	WIF1	Q9Y5W5	379 aa		6.63	□□□□□ -1.35
YBX3-209	ENST00000540747		H0YIV9	168 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747		K7EPI3	171 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	PLOD2	O00469	737 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	GNB5	O14775	395 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	KERA	O60938	352 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	ICOSLG	O75144	302 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	PPM1B	O75688	479 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	TGM6	O95932	706 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	CGA	P01215	116 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	CRH	P06850	196 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	FAM58BP	P0C7Q3	252 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	PCNA	P12004	261 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	ZNF708	P17019	499 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	CHM	P24386	653 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	MASP1	P48740	699 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	ARL4C	P56559	192 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	B3GALT5-AS1	P59052	145 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	RPS13	P62277	151 aa	Known RBP	6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	EEF1A1	P68104	462 aa	Known RBP	6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	RPP38	P78345	283 aa	Known RBP	6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	FAM27E3	Q08E93	113 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	SNTA1	Q13424	505 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	GAB1	Q13480	694 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	CUL3	Q13618	768 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	GUSBP1	Q15486	140 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	EEF1A1P5	Q5VTE0	462 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	OR52E8	Q6IFG1	317 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	SLC30A6	Q6NXT4	461 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	C8orf74	Q6P047	294 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	ZNF474	Q6S9Z5	364 aa	Predicted RBP	6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	ANGPTL8	Q6UXH0	198 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	C20orf204	Q6ZNR8	217 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	C22orf34	Q6ZV56	151 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	CYS1	Q717R9	158 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	P3H2	Q8IVL5	708 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	PRR22	Q8IZ63	422 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	GCNT2	Q8N0V5	402 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	OR7G1	Q8NGA0	311 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	OR1J4	Q8NGS1	313 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	WDR20	Q8TBZ3	569 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	STARD4	Q96DR4	205 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	TSPAN17	Q96FV3	270 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	MTERF1	Q99551	399 aa	Known RBP	6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	RBBP8	Q99708	897 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	PIGQ	Q9BRB3	760 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	LRRC1	Q9BTT6	524 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	REPIN1	Q9BWE0	567 aa	Known RBP	6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	OSBPL11	Q9BXB4	747 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	OR10A5	Q9H207	317 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	GALNT9	Q9HCQ5	603 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	SERHL	Q9NQF3	203 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	ZNF701	Q9NV72	531 aa	Predicted RBP	6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	CD274	Q9NZQ7	290 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	CES1P1	Q9UKY3	287 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	RNF112	Q9ULX5	631 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	EXO1	Q9UQ84	846 aa	Known RBP	6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	EIF3L	Q9Y262	564 aa	Known RBP	6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	DLGAP4	Q9Y2H0	992 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	PRR14L	Q5THK1	2151 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	DSCAM	O60469	2012 aa		6.62	□□□□□ -1.35
YBX3-209	ENST00000540747	LRRC14B	A6NHZ5	514 aa		6.61	□□□□□ -1.35
YBX3-209	ENST00000540747	FAM159B	A6NKW6	160 aa		6.61	□□□□□ -1.35
YBX3-209	ENST00000540747		H0Y3Z8	333 aa		6.61	□□□□□ -1.35
YBX3-209	ENST00000540747	UBXN8	O00124	270 aa		6.61	□□□□□ -1.35
YBX3-209	ENST00000540747	FOXE1	O00358	373 aa	Predicted RBP	6.61	□□□□□ -1.35
YBX3-209	ENST00000540747	SMAD7	O15105	426 aa	Known RBP	6.61	□□□□□ -1.35
YBX3-209	ENST00000540747	T	O15178	435 aa		6.61	□□□□□ -1.35
YBX3-209	ENST00000540747	ZIC3	O60481	467 aa		6.61	□□□□□ -1.35
YBX3-209	ENST00000540747	UGDH	O60701	494 aa		6.61	□□□□□ -1.35

Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms