RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 MIEF1Q9NQG6 463 aa11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 INSL6Q9Y581 213 aa11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 COL4A3Q01955 1670 aa11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 SYNDIG1LA6NDD5 238 aa11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 KIAA0355O15063 1070 aa11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 ZNF780AO75290 641 aaPredicted RBP11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 SCG5P05408 212 aa11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 FAPQ12884 760 aa11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 ELOAQ14241 798 aaKnown RBP11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 ZNF234Q14588 700 aa11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 MTFR2Q6P444 385 aa11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 CASP12Q6UXS9 341 aa11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 TMIEQ8NEW7 156 aa11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 OR6C4Q8NGE1 309 aa11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 TAPBPLQ9BX59 468 aa11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 SIRT3Q9NTG7 399 aaPredicted RBP11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 SLC23A1Q9UHI7 598 aa11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 TMCC3Q9ULS5 477 aa11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 FAM240BA0A1B0GVZ2 78 aa11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 H7BY64 318 aa11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 GTPBP1O00178 669 aaKnown RBP11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 PI15O43692 258 aa11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 TMPRSS11DO60235 418 aa11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 OR2B3O76000 313 aa11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 DDCP20711 480 aa11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 UQCRC2P22695 453 aa11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 OR3A3P47888 321 aa11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 UBE3DQ7Z6J8 389 aa11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 CACUL1Q86Y37 369 aa11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 VWA5B2Q8N398 1253 aa11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 Q8N402 240 aa11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 C19orf18Q8NEA5 215 aa11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 KLHL6Q8WZ60 621 aa11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 TFGQ92734 400 aaPredicted RBP11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 ZBED6CLQ96FA7 236 aaPredicted RBP11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 TMEM80Q96HE8 168 aa11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 PRAP1Q96NZ9 151 aa11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 ZCCHC2Q9C0B9 1178 aaKnown RBP11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 AICDAQ9GZX7 198 aa11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 TRIM45Q9H8W5 580 aaPredicted RBP11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 PLEKHB1Q9UF11 243 aaPredicted RBP11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 KCND3Q9UK17 655 aa11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 GPR34Q9UPC5 381 aa11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 MRPS23Q9Y3D9 190 aaKnown RBP11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 KIAA0100Q14667 2235 aaKnown RBP11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 DOCK9Q9BZ29 2069 aa11.86□□□□□ -0.51
SFSWAP-208ENST00000539506 A0A1W2PPV9 198 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 CIB4A0PJX0 185 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 ZAR1LA6NP61 321 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 ISM1B1AKI9 464 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 M0R3H8 397 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 CASKO14936 926 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 SLC2A2P11168 524 aaPredicted RBP11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 P2RY2P41231 377 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 XKP51811 444 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 HSPB3Q12988 150 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 KHDRBS2Q5VWX1 349 aaKnown RBP11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 SIGIRRQ6IA17 410 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 REEP3Q6NUK4 255 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 LCTLQ6UWM7 567 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 UNC5DQ6UXZ4 953 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 ZNF765Q7L2R6 523 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 SLC30A8Q8IWU4 369 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 DNAJC5GQ8N7S2 189 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 FAM46DQ8NEK8 389 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 GRPEL2Q8TAA5 225 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 SETD7Q8WTS6 366 aaKnown RBP11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 TMEM19Q96HH6 336 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 COX14Q96I36 57 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 CDCA4Q9BXL8 241 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 POLR2J3Q9H1A7 115 aaKnown RBP11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 TMEM245Q9H330 911 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 B3GAT2Q9NPZ5 323 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 ACOXLQ9NUZ1 547 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 TEX10Q9NXF1 929 aaPredicted RBP11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 REV1Q9UBZ9 1251 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 A3GALT2U3KPV4 340 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 MUC22E2RYF6 1773 aaPredicted RBP11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 HMGN4O00479 90 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 LCMT2O60294 686 aaKnown RBP11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 IFNW1P05000 195 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 RHCEP18577 417 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 INPP1P49441 399 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 WSCD2Q2TBF2 565 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 TRIQKQ629K1 86 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 TCTN3Q6NUS6 607 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 CNIH2Q6PI25 160 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 ERN2Q76MJ5 926 aaKnown RBP11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 KRT73Q86Y46 540 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 CREB3L4Q8TEY5 395 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 TM9SF4Q92544 642 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 SLC9A6Q92581 669 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 DACT3Q96B18 629 aaPredicted RBP11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 UPRTQ96BW1 309 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 NEURL3Q96EH8 262 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 LRR1Q96L50 414 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 MS4A8Q9BY19 250 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 KCNK12Q9HB15 430 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 IL23AQ9NPF7 189 aa11.85□□□□□ -0.51
SFSWAP-208ENST00000539506 GRIP1Q9Y3R0 1128 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms