RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 MAGED4Q96JG8 741 aa8.94□□□□□ -0.98
HDAC3-208ENST00000476739 FAM210AQ96ND0 272 aa8.94□□□□□ -0.98
HDAC3-208ENST00000476739 FRMD6Q96NE9 622 aa8.94□□□□□ -0.98
HDAC3-208ENST00000476739 TSPAN10Q9H1Z9 355 aaPredicted RBP8.94□□□□□ -0.98
HDAC3-208ENST00000476739 ASIC5Q9NY37 505 aa8.94□□□□□ -0.98
HDAC3-208ENST00000476739 NOP53Q9NZM5 478 aaKnown RBP8.94□□□□□ -0.98
HDAC3-208ENST00000476739 ATP6V1HQ9UI12 483 aa8.94□□□□□ -0.98
HDAC3-208ENST00000476739 PCDHGB6Q9Y5F9 930 aa8.94□□□□□ -0.98
HDAC3-208ENST00000476739 FASNP49327 2511 aaKnown RBP8.94□□□□□ -0.98
HDAC3-208ENST00000476739 SVILO95425 2214 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 PLOD2O00469 737 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 ANKRD28O15084 1053 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 HDAC3O15379 428 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 PDPK1O15530 556 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 ZNHIT1O43257 154 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 PEX1O43933 1283 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 PLOD3O60568 738 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 VPS4BO75351 444 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 PSMG1O95456 288 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 CT45A8P0DMV1 189 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 CT45A9P0DMV2 189 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 LBPP18428 481 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 PIGAP37287 484 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 DNASE1L1P49184 302 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 MEOX1P50221 254 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 CDK9P50750 372 aaKnown RBP8.93□□□□□ -0.98
HDAC3-208ENST00000476739 NME5P56597 212 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 CLDN8P56748 225 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 FBXW4P57775 412 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 INAQ16352 499 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 SMU1Q2TAY7 513 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 CT45A2Q5DJT8 189 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 PRAMEF20Q5VT98 475 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 HLA-DQA1Q5Y7H0 255 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 OPN5Q6U736 354 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 NPSR1Q6W5P4 371 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 RTL4Q6ZR62 310 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 R3HCC1LQ7Z5L2 792 aaKnown RBP8.93□□□□□ -0.98
HDAC3-208ENST00000476739 GPALPP1Q8IXQ4 340 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 OR2L13Q8N349 312 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 SLC15A4Q8N697 577 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 BCORP1Q8N888 145 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 GALNT11Q8NCW6 608 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 OR4N2Q8NGD1 307 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 PIWIL2Q8TC59 973 aaKnown RBP8.93□□□□□ -0.98
HDAC3-208ENST00000476739 NR4A3Q92570 626 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 TMEM125Q96AQ2 219 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 MTERF3Q96E29 417 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 LCORQ96JN0 433 aaPredicted RBP8.93□□□□□ -0.98
HDAC3-208ENST00000476739 MAELQ96JY0 434 aaKnown RBP8.93□□□□□ -0.98
HDAC3-208ENST00000476739 TEX37Q96LM6 180 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 SLX1AQ9BQ83 275 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 FOLH1BQ9HBA9 442 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 PROK2Q9HC23 129 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 TIMMDC1Q9NPL8 285 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 SIRT3Q9NTG7 399 aaPredicted RBP8.93□□□□□ -0.98
HDAC3-208ENST00000476739 OLAHQ9NV23 265 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 INTS9Q9NV88 658 aaKnown RBP8.93□□□□□ -0.98
HDAC3-208ENST00000476739 VPS4AQ9UN37 437 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 C19orf53Q9UNZ5 99 aaPredicted RBP8.93□□□□□ -0.98
HDAC3-208ENST00000476739 EIF3LQ9Y262 564 aaKnown RBP8.93□□□□□ -0.98
HDAC3-208ENST00000476739 GPR55Q9Y2T6 319 aaPredicted RBP8.93□□□□□ -0.98
HDAC3-208ENST00000476739 NPFFR2Q9Y5X5 522 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 CHCHD2Q9Y6H1 151 aaPredicted RBP8.93□□□□□ -0.98
HDAC3-208ENST00000476739 NUP214P35658 2090 aaPredicted RBP8.93□□□□□ -0.98
HDAC3-208ENST00000476739 ZGRF1Q86YA3 2104 aa8.93□□□□□ -0.98
HDAC3-208ENST00000476739 NINQ8N4C6 2090 aa8.92□□□□□ -0.98
HDAC3-208ENST00000476739 A0A087WV62 115 aa8.92□□□□□ -0.98
HDAC3-208ENST00000476739 C9JVG2 144 aa8.92□□□□□ -0.98
HDAC3-208ENST00000476739 BCAS2O75934 225 aaPredicted RBP8.92□□□□□ -0.98
HDAC3-208ENST00000476739 ABCB1P08183 1280 aaPredicted RBP8.92□□□□□ -0.98
HDAC3-208ENST00000476739 DRD5P21918 477 aa8.92□□□□□ -0.98
HDAC3-208ENST00000476739 ABCD3P28288 659 aa8.92□□□□□ -0.98
HDAC3-208ENST00000476739 HPCAL1P37235 193 aa8.92□□□□□ -0.98
HDAC3-208ENST00000476739 PPICP45877 212 aa8.92□□□□□ -0.98
HDAC3-208ENST00000476739 MANFP55145 182 aaKnown RBP8.92□□□□□ -0.98
HDAC3-208ENST00000476739 WNT3P56703 355 aa8.92□□□□□ -0.98
HDAC3-208ENST00000476739 C21orf58P58505 322 aa8.92□□□□□ -0.98
HDAC3-208ENST00000476739 UFM1P61960 85 aa8.92□□□□□ -0.98
HDAC3-208ENST00000476739 PHC1P78364 1004 aa8.92□□□□□ -0.98
HDAC3-208ENST00000476739 PSG6Q00889 435 aa8.92□□□□□ -0.98
HDAC3-208ENST00000476739 SRSF1Q07955 248 aaKnown RBP eCLIP8.92□□□□□ -0.98
HDAC3-208ENST00000476739 MAD2L1Q13257 205 aaPredicted RBP8.92□□□□□ -0.98
HDAC3-208ENST00000476739 NTRK2Q16620 822 aa8.92□□□□□ -0.98
HDAC3-208ENST00000476739 EIF2S3LQ2VIR3 472 aaKnown RBP8.92□□□□□ -0.98
HDAC3-208ENST00000476739 CPTPQ5TA50 214 aa8.92□□□□□ -0.98
HDAC3-208ENST00000476739 TMEM198Q66K66 360 aa8.92□□□□□ -0.98
HDAC3-208ENST00000476739 BICRALQ6AI39 1079 aa8.92□□□□□ -0.98
HDAC3-208ENST00000476739 OGFOD2Q6N063 350 aa8.92□□□□□ -0.98
HDAC3-208ENST00000476739 FAM47EQ6ZV65 393 aa8.92□□□□□ -0.98
HDAC3-208ENST00000476739 ATCAYQ86WG3 371 aa8.92□□□□□ -0.98
HDAC3-208ENST00000476739 SIAH3Q8IW03 269 aa8.92□□□□□ -0.98
HDAC3-208ENST00000476739 KIRREL3Q8IZU9 778 aa8.92□□□□□ -0.98
HDAC3-208ENST00000476739 TAGAPQ8N103 731 aa8.92□□□□□ -0.98
HDAC3-208ENST00000476739 GOLM1Q8NBJ4 401 aa8.92□□□□□ -0.98
HDAC3-208ENST00000476739 FAM13CQ8NE31 585 aa8.92□□□□□ -0.98
HDAC3-208ENST00000476739 C17orf47Q8NEP4 570 aa8.92□□□□□ -0.98
HDAC3-208ENST00000476739 OR2M7Q8NG81 312 aa8.92□□□□□ -0.98
HDAC3-208ENST00000476739 LRRC8CQ8TDW0 803 aa8.92□□□□□ -0.98
HDAC3-208ENST00000476739 PAQR8Q8TEZ7 354 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms