RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 GBP7Q8N8V2 638 aaPredicted RBP14.41□□□□□ -0.1
CCDC88B-205ENST00000472524 C17orf47Q8NEP4 570 aa14.41□□□□□ -0.1
CCDC88B-205ENST00000472524 OR52R1Q8NGF1 315 aa14.41□□□□□ -0.1
CCDC88B-205ENST00000472524 LILRB4Q8NHJ6 448 aa14.41□□□□□ -0.1
CCDC88B-205ENST00000472524 EXOSC8Q96B26 276 aaKnown RBP14.41□□□□□ -0.1
CCDC88B-205ENST00000472524 TTYH2Q9BSA4 534 aa14.41□□□□□ -0.1
CCDC88B-205ENST00000472524 MID1IP1Q9NPA3 183 aa14.41□□□□□ -0.1
CCDC88B-205ENST00000472524 NPDC1Q9NQX5 325 aaPredicted RBP14.41□□□□□ -0.1
CCDC88B-205ENST00000472524 QPCTLQ9NXS2 382 aa14.41□□□□□ -0.1
CCDC88B-205ENST00000472524 ZNF639Q9UID6 485 aa14.41□□□□□ -0.1
CCDC88B-205ENST00000472524 CFL2Q9Y281 166 aa14.41□□□□□ -0.1
CCDC88B-205ENST00000472524 PLLPQ9Y342 182 aa14.41□□□□□ -0.1
CCDC88B-205ENST00000472524 FAM215AQ9Y5M1 114 aa14.41□□□□□ -0.1
CCDC88B-205ENST00000472524 KIAA1549Q9HCM3 1950 aa14.41□□□□□ -0.1
CCDC88B-205ENST00000472524 CCDC151A5D8V7 595 aa14.4□□□□□ -0.1
CCDC88B-205ENST00000472524 ANKRD33BA6NCL7 494 aa14.4□□□□□ -0.1
CCDC88B-205ENST00000472524 G3V2L1 256 aa14.4□□□□□ -0.1
CCDC88B-205ENST00000472524 WDR1O75083 606 aa14.4□□□□□ -0.1
CCDC88B-205ENST00000472524 TRAPPC6AO75865 159 aa14.4□□□□□ -0.1
CCDC88B-205ENST00000472524 GLI4P10075 376 aa14.4□□□□□ -0.1
CCDC88B-205ENST00000472524 TIA1P31483 386 aaKnown RBP eCLIP14.4□□□□□ -0.1
CCDC88B-205ENST00000472524 FOXA1P55317 472 aa14.4□□□□□ -0.1
CCDC88B-205ENST00000472524 PLCXD2Q0VAA5 305 aa14.4□□□□□ -0.1
CCDC88B-205ENST00000472524 TOMM20Q15388 145 aa14.4□□□□□ -0.1
CCDC88B-205ENST00000472524 TRMT12Q53H54 448 aaKnown RBP14.4□□□□□ -0.1
CCDC88B-205ENST00000472524 SPDYAQ5MJ70 313 aa14.4□□□□□ -0.1
CCDC88B-205ENST00000472524 DESI1Q6ICB0 168 aa14.4□□□□□ -0.1
CCDC88B-205ENST00000472524 CCDC116Q8IYX3 515 aa14.4□□□□□ -0.1
CCDC88B-205ENST00000472524 CCDC63Q8NA47 563 aa14.4□□□□□ -0.1
CCDC88B-205ENST00000472524 CDC26Q8NHZ8 85 aa14.4□□□□□ -0.1
CCDC88B-205ENST00000472524 NEIL3Q8TAT5 605 aa14.4□□□□□ -0.1
CCDC88B-205ENST00000472524 C16orf78Q8WTQ4 265 aa14.4□□□□□ -0.1
CCDC88B-205ENST00000472524 OMA1Q96E52 524 aa14.4□□□□□ -0.1
CCDC88B-205ENST00000472524 CCDC126Q96EE4 140 aa14.4□□□□□ -0.1
CCDC88B-205ENST00000472524 LCORQ96JN0 433 aaPredicted RBP14.4□□□□□ -0.1
CCDC88B-205ENST00000472524 ZNF681Q96N22 645 aa14.4□□□□□ -0.1
CCDC88B-205ENST00000472524 METTL7AQ9H8H3 244 aa14.4□□□□□ -0.1
CCDC88B-205ENST00000472524 ACKR4Q9NPB9 350 aa14.4□□□□□ -0.1
CCDC88B-205ENST00000472524 KCNJ16Q9NPI9 418 aa14.4□□□□□ -0.1
CCDC88B-205ENST00000472524 EHD3Q9NZN3 535 aa14.4□□□□□ -0.1
CCDC88B-205ENST00000472524 C2CD3Q4AC94 2353 aa14.4□□□□□ -0.1
CCDC88B-205ENST00000472524 NF1P21359 2839 aa14.39□□□□□ -0.11
CCDC88B-205ENST00000472524 C15orf38-AP3S2A0A0A6YYH1 394 aa14.39□□□□□ -0.11
CCDC88B-205ENST00000472524 UBFD1O14562 309 aaKnown RBP14.39□□□□□ -0.11
CCDC88B-205ENST00000472524 GNB5O14775 395 aa14.39□□□□□ -0.11
CCDC88B-205ENST00000472524 CRCPO75575 148 aa14.39□□□□□ -0.11
CCDC88B-205ENST00000472524 PPM1BO75688 479 aa14.39□□□□□ -0.11
CCDC88B-205ENST00000472524 SNX4O95219 450 aa14.39□□□□□ -0.11
CCDC88B-205ENST00000472524 PROCP04070 461 aa14.39□□□□□ -0.11
CCDC88B-205ENST00000472524 ABCB1P08183 1280 aaPredicted RBP14.39□□□□□ -0.11
CCDC88B-205ENST00000472524 DRD2P14416 443 aa14.39□□□□□ -0.11
CCDC88B-205ENST00000472524 IGFBP2P18065 325 aa14.39□□□□□ -0.11
CCDC88B-205ENST00000472524 SOX18P35713 384 aa14.39□□□□□ -0.11
CCDC88B-205ENST00000472524 CASP3P42574 277 aa14.39□□□□□ -0.11
CCDC88B-205ENST00000472524 TFF3Q07654 80 aa14.39□□□□□ -0.11
CCDC88B-205ENST00000472524 IMPG1Q17R60 797 aa14.39□□□□□ -0.11
CCDC88B-205ENST00000472524 SPNS3Q6ZMD2 512 aa14.39□□□□□ -0.11
CCDC88B-205ENST00000472524 PACS2Q86VP3 889 aa14.39□□□□□ -0.11
CCDC88B-205ENST00000472524 CNPY4Q8N129 248 aa14.39□□□□□ -0.11
CCDC88B-205ENST00000472524 OR9A2Q8NGT5 310 aa14.39□□□□□ -0.11
CCDC88B-205ENST00000472524 EPS8L3Q8TE67 593 aaKnown RBP14.39□□□□□ -0.11
CCDC88B-205ENST00000472524 KAT2AQ92830 837 aa14.39□□□□□ -0.11
CCDC88B-205ENST00000472524 CTHRC1Q96CG8 243 aa14.39□□□□□ -0.11
CCDC88B-205ENST00000472524 SECISBP2Q96T21 854 aaKnown RBP14.39□□□□□ -0.11
CCDC88B-205ENST00000472524 ANGPTL4Q9BY76 406 aa14.39□□□□□ -0.11
CCDC88B-205ENST00000472524 C12orf65Q9H3J6 166 aaKnown RBP14.39□□□□□ -0.11
CCDC88B-205ENST00000472524 ANKRA2Q9H9E1 313 aa14.39□□□□□ -0.11
CCDC88B-205ENST00000472524 GIMAP4Q9NUV9 329 aa14.39□□□□□ -0.11
CCDC88B-205ENST00000472524 PRODH2Q9UF12 536 aa14.39□□□□□ -0.11
CCDC88B-205ENST00000472524 PCNX3Q9H6A9 2034 aa14.38□□□□□ -0.11
CCDC88B-205ENST00000472524 A0A0G2JNJ9 132 aa14.38□□□□□ -0.11
CCDC88B-205ENST00000472524 NME6O75414 186 aaPredicted RBP14.38□□□□□ -0.11
CCDC88B-205ENST00000472524 TOXO94900 526 aa14.38□□□□□ -0.11
CCDC88B-205ENST00000472524 GABRA1P14867 456 aa14.38□□□□□ -0.11
CCDC88B-205ENST00000472524 ADH7P40394 386 aa14.38□□□□□ -0.11
CCDC88B-205ENST00000472524 ZFP36L2P47974 494 aaKnown RBP14.38□□□□□ -0.11
CCDC88B-205ENST00000472524 NAGLUP54802 743 aa14.38□□□□□ -0.11
CCDC88B-205ENST00000472524 HEPACAMQ14CZ8 416 aa14.38□□□□□ -0.11
CCDC88B-205ENST00000472524 CCDC153Q494R4 210 aa14.38□□□□□ -0.11
CCDC88B-205ENST00000472524 ZNF628Q5EBL2 1059 aa14.38□□□□□ -0.11
CCDC88B-205ENST00000472524 CFAP157Q5JU67 520 aa14.38□□□□□ -0.11
CCDC88B-205ENST00000472524 FNDC7Q5VTL7 733 aa14.38□□□□□ -0.11
CCDC88B-205ENST00000472524 FRMD7Q6ZUT3 714 aa14.38□□□□□ -0.11
CCDC88B-205ENST00000472524 EIF1ADQ8N9N8 165 aaKnown RBP14.38□□□□□ -0.11
CCDC88B-205ENST00000472524 ZNF675Q8TD23 568 aa14.38□□□□□ -0.11
CCDC88B-205ENST00000472524 HSPBAP1Q96EW2 488 aa14.38□□□□□ -0.11
CCDC88B-205ENST00000472524 GNRHR2Q96P88 292 aa14.38□□□□□ -0.11
CCDC88B-205ENST00000472524 NODALQ96S42 347 aa14.38□□□□□ -0.11
CCDC88B-205ENST00000472524 SHCBP1LQ9BZQ2 653 aa14.38□□□□□ -0.11
CCDC88B-205ENST00000472524 Q9UFV3 132 aa14.38□□□□□ -0.11
CCDC88B-205ENST00000472524 C15orf41Q9Y2V0 281 aa14.38□□□□□ -0.11
CCDC88B-205ENST00000472524 MPDZO75970 2070 aa14.37□□□□□ -0.11
CCDC88B-205ENST00000472524 COPEO14579 308 aa14.37□□□□□ -0.11
CCDC88B-205ENST00000472524 ACOX3O15254 700 aa14.37□□□□□ -0.11
CCDC88B-205ENST00000472524 PLIN3O60664 434 aa14.37□□□□□ -0.11
CCDC88B-205ENST00000472524 ANXA4P09525 319 aaPredicted RBP14.37□□□□□ -0.11
CCDC88B-205ENST00000472524 NAGAP17050 411 aa14.37□□□□□ -0.11
CCDC88B-205ENST00000472524 MSX1P28360 303 aa14.37□□□□□ -0.11
CCDC88B-205ENST00000472524 CCT5P48643 541 aa14.37□□□□□ -0.11
CCDC88B-205ENST00000472524 EMDP50402 254 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms