RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 CYB561P49447 251 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 MLF1P58340 268 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 TAS2R39P59534 338 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 RAB8AP61006 207 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 BTG2P78543 158 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 PDIA2Q13087 525 aaKnown RBP6.75□□□□□ -1.33
USP54-208ENST00000461520 RBBP5Q15291 538 aaKnown RBP6.75□□□□□ -1.33
USP54-208ENST00000461520 TGFBIQ15582 683 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 XKRXQ6PP77 449 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 Q6ZPB1 254 aaPredicted RBP6.75□□□□□ -1.33
USP54-208ENST00000461520 FRA10AC1Q70Z53 315 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 GALNTL5Q7Z4T8 443 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 MCEMP1Q8IX19 187 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 KLHDC8AQ8IYD2 350 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 CA13Q8N1Q1 262 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 BBOF1Q8ND07 529 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 NFAM1Q8NET5 270 aaPredicted RBP6.75□□□□□ -1.33
USP54-208ENST00000461520 NRG4Q8WWG1 115 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 RHBDF1Q96CC6 855 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 BOD1Q96IK1 185 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 MAGED4Q96JG8 741 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 FAR2Q96K12 515 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 CAPZA3Q96KX2 299 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 TRIM51Q9BSJ1 452 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 NPLQ9BXD5 320 aaPredicted RBP6.75□□□□□ -1.33
USP54-208ENST00000461520 CAPS2Q9BXY5 557 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 HES7Q9BYE0 225 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 DERL2Q9GZP9 239 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 RHOJQ9H4E5 214 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 KLHL31Q9H511 634 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 GRPEL1Q9HAV7 217 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 RNF14Q9UBS8 474 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 CTNNAL1Q9UBT7 734 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 MTO1Q9Y2Z2 717 aaKnown RBP6.75□□□□□ -1.33
USP54-208ENST00000461520 MMACHCQ9Y4U1 282 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 ITPR3Q14573 2671 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 CCDC168Q8NDH2 2452 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 A0A088AWK7 358 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 CTAGE15A4D2H0 777 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 CDHR4A6H8M9 788 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 NPIPA5E9PKD4 350 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 FAM227AF5H4B4 570 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 ASNA1O43681 348 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 NME2P1O60361 137 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 SLC25A12O75746 678 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 WISP2O76076 250 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 WDR47O94967 919 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 WISP3O95389 354 aaPredicted RBP6.74□□□□□ -1.33
USP54-208ENST00000461520 MAOAP21397 527 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 ZNF10P21506 573 aaPredicted RBP6.74□□□□□ -1.33
USP54-208ENST00000461520 HTR1EP28566 365 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 PTGER4P35408 488 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 GGT5P36269 586 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 HLCSP50747 726 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 CLCN2P51788 898 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 SMSP52788 366 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 SLC12A2P55011 1212 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 HSD17B7P56937 341 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 GNG11P61952 73 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 BTN3A2P78410 334 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 ADORA2A-AS1P86434 159 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 FASTKD3Q14CZ7 662 aaKnown RBP6.74□□□□□ -1.33
USP54-208ENST00000461520 TSNQ15631 228 aaKnown RBP6.74□□□□□ -1.33
USP54-208ENST00000461520 C3AR1Q16581 482 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 MAPKAPK3Q16644 382 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 ZNF630Q2M218 657 aaPredicted RBP6.74□□□□□ -1.33
USP54-208ENST00000461520 ERCC6LQ2NKX8 1250 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 TOR1AIP1Q5JTV8 583 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 CDKL4Q5MAI5 379 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 TMIGD1Q6UXZ0 262 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 CYS1Q717R9 158 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 CTAGE6Q86UF2 777 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 SIAH3Q8IW03 269 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 CEP97Q8IW35 865 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP6.74□□□□□ -1.33
USP54-208ENST00000461520 ZBED8Q8IZ13 594 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 EID3Q8N140 333 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 KRT78Q8N1N4 520 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 GHDCQ8N2G8 530 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 TCAIMQ8N3R3 496 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 KIF2BQ8N4N8 673 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 POGLUT1Q8NBL1 392 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 APCDD1LQ8NCL9 501 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 B3GNT7Q8NFL0 401 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 ADAMTS18Q8TE60 1221 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 ANKRD49Q8WVL7 239 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 CDKL2Q92772 493 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 RAB24Q969Q5 203 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 TMEM125Q96AQ2 219 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 MS4A6EQ96DS6 147 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 NAPGQ99747 312 aaPredicted RBP6.74□□□□□ -1.33
USP54-208ENST00000461520 DEFB126Q9BYW3 111 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 TRIM31Q9BZY9 425 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 EHD1Q9H4M9 534 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 NT5DC2Q9H857 520 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 MANSC1Q9H8J5 431 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 NECTIN3Q9NQS3 549 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 TBCCD1Q9NVR7 557 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 KCNE5Q9UJ90 142 aa6.74□□□□□ -1.33
USP54-208ENST00000461520 SH3BGRL2Q9UJC5 107 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms