RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 TP53INP1Q96A56 240 aa17.2■□□□□ 0.34
USP39-209ENST00000458268 PPCDCQ96CD2 204 aa17.2■□□□□ 0.34
USP39-209ENST00000458268 TUBGCP3Q96CW5 907 aa17.2■□□□□ 0.34
USP39-209ENST00000458268 LCORQ96JN0 433 aaPredicted RBP17.2■□□□□ 0.34
USP39-209ENST00000458268 DOHHQ9BU89 302 aa17.2■□□□□ 0.34
USP39-209ENST00000458268 SSU72Q9NP77 194 aaKnown RBP17.2■□□□□ 0.34
USP39-209ENST00000458268 PRODH2Q9UF12 536 aa17.2■□□□□ 0.34
USP39-209ENST00000458268 FLNBO75369 2602 aaKnown RBP17.2■□□□□ 0.34
USP39-209ENST00000458268 NCKAP5O14513 1909 aa17.19■□□□□ 0.34
USP39-209ENST00000458268 ICE1Q9Y2F5 2266 aa17.19■□□□□ 0.34
USP39-209ENST00000458268 PDPK1O15530 556 aa17.19■□□□□ 0.34
USP39-209ENST00000458268 FGF4P08620 206 aa17.19■□□□□ 0.34
USP39-209ENST00000458268 PRPH2P23942 346 aa17.19■□□□□ 0.34
USP39-209ENST00000458268 ABCD3P28288 659 aa17.19■□□□□ 0.34
USP39-209ENST00000458268 MASP1P48740 699 aa17.19■□□□□ 0.34
USP39-209ENST00000458268 ABCE1P61221 599 aaKnown RBP17.19■□□□□ 0.34
USP39-209ENST00000458268 MAGOHP61326 146 aaKnown RBP17.19■□□□□ 0.34
USP39-209ENST00000458268 KIAA0040Q15053 153 aa17.19■□□□□ 0.34
USP39-209ENST00000458268 NTRK2Q16620 822 aa17.19■□□□□ 0.34
USP39-209ENST00000458268 UGT3A2Q3SY77 523 aa17.19■□□□□ 0.34
USP39-209ENST00000458268 DESI1Q6ICB0 168 aa17.19■□□□□ 0.34
USP39-209ENST00000458268 IKBIPQ70UQ0 350 aa17.19■□□□□ 0.34
USP39-209ENST00000458268 SPPL2CQ8IUH8 684 aa17.19■□□□□ 0.34
USP39-209ENST00000458268 FBXW8Q8N3Y1 598 aa17.19■□□□□ 0.34
USP39-209ENST00000458268 LIX1Q8N485 282 aa17.19■□□□□ 0.34
USP39-209ENST00000458268 TMEM251Q8N6I4 163 aa17.19■□□□□ 0.34
USP39-209ENST00000458268 ZNF781Q8N8C0 355 aa17.19■□□□□ 0.34
USP39-209ENST00000458268 FNDC5Q8NAU1 212 aa17.19■□□□□ 0.34
USP39-209ENST00000458268 ZNF675Q8TD23 568 aa17.19■□□□□ 0.34
USP39-209ENST00000458268 PAQR8Q8TEZ7 354 aa17.19■□□□□ 0.34
USP39-209ENST00000458268 CIDECQ96AQ7 238 aaPredicted RBP17.19■□□□□ 0.34
USP39-209ENST00000458268 OMA1Q96E52 524 aa17.19■□□□□ 0.34
USP39-209ENST00000458268 PPP3R2Q96LZ3 170 aa17.19■□□□□ 0.34
USP39-209ENST00000458268 C3orf30Q96M34 536 aa17.19■□□□□ 0.34
USP39-209ENST00000458268 CCT7Q99832 543 aa17.19■□□□□ 0.34
USP39-209ENST00000458268 GLIPR2Q9H4G4 154 aa17.19■□□□□ 0.34
USP39-209ENST00000458268 LDAHQ9H6V9 325 aa17.19■□□□□ 0.34
USP39-209ENST00000458268 METTL7AQ9H8H3 244 aa17.19■□□□□ 0.34
USP39-209ENST00000458268 PLEKHB1Q9UF11 243 aaPredicted RBP17.19■□□□□ 0.34
USP39-209ENST00000458268 ZNF639Q9UID6 485 aa17.19■□□□□ 0.34
USP39-209ENST00000458268 BOKQ9UMX3 212 aaPredicted RBP17.19■□□□□ 0.34
USP39-209ENST00000458268 EXO1Q9UQ84 846 aaKnown RBP17.19■□□□□ 0.34
USP39-209ENST00000458268 LIPGQ9Y5X9 500 aa17.19■□□□□ 0.34
USP39-209ENST00000458268 CHCHD2Q9Y6H1 151 aaPredicted RBP17.19■□□□□ 0.34
USP39-209ENST00000458268 ZNF407Q9C0G0 2248 aa17.19■□□□□ 0.34
USP39-209ENST00000458268 TMEM120BA0PK00 339 aa17.18■□□□□ 0.34
USP39-209ENST00000458268 MYO1GB0I1T2 1018 aa17.18■□□□□ 0.34
USP39-209ENST00000458268 BIRC5O15392 142 aa17.18■□□□□ 0.34
USP39-209ENST00000458268 REM1O75628 298 aa17.18■□□□□ 0.34
USP39-209ENST00000458268 MAPK1P28482 360 aa17.18■□□□□ 0.34
USP39-209ENST00000458268 PTGS2P35354 604 aa17.18■□□□□ 0.34
USP39-209ENST00000458268 SOX18P35713 384 aa17.18■□□□□ 0.34
USP39-209ENST00000458268 KRT20P35900 424 aa17.18■□□□□ 0.34
USP39-209ENST00000458268 CA7P43166 264 aa17.18■□□□□ 0.34
USP39-209ENST00000458268 SLC1A6P48664 564 aa17.18■□□□□ 0.34
USP39-209ENST00000458268 EMDP50402 254 aa17.18■□□□□ 0.34
USP39-209ENST00000458268 CORO7P57737 925 aa17.18■□□□□ 0.34
USP39-209ENST00000458268 NCCRP1Q6ZVX7 275 aaPredicted RBP17.18■□□□□ 0.34
USP39-209ENST00000458268 ZNF551Q7Z340 670 aaPredicted RBP17.18■□□□□ 0.34
USP39-209ENST00000458268 CD163Q86VB7 1156 aa17.18■□□□□ 0.34
USP39-209ENST00000458268 DND1Q8IYX4 353 aaKnown RBP17.18■□□□□ 0.34
USP39-209ENST00000458268 CTHRC1Q96CG8 243 aa17.18■□□□□ 0.34
USP39-209ENST00000458268 PSMG3-AS1Q96PY0 264 aa17.18■□□□□ 0.34
USP39-209ENST00000458268 REEP4Q9H6H4 257 aa17.18■□□□□ 0.34
USP39-209ENST00000458268 IL1RL2Q9HB29 575 aa17.18■□□□□ 0.34
USP39-209ENST00000458268 FOLH1BQ9HBA9 442 aa17.18■□□□□ 0.34
USP39-209ENST00000458268 DDX18Q9NVP1 670 aaKnown RBP17.18■□□□□ 0.34
USP39-209ENST00000458268 CNIH4Q9P003 139 aa17.18■□□□□ 0.34
USP39-209ENST00000458268 TNFRSF10DQ9UBN6 386 aa17.18■□□□□ 0.34
USP39-209ENST00000458268 ACTL7BQ9Y614 415 aa17.18■□□□□ 0.34
USP39-209ENST00000458268 SPTBN1Q01082 2364 aaKnown RBP17.17■□□□□ 0.34
USP39-209ENST00000458268 TMEM114B3SHH9 223 aa17.17■□□□□ 0.34
USP39-209ENST00000458268 PRRG2O14669 202 aa17.17■□□□□ 0.34
USP39-209ENST00000458268 GNB5O14775 395 aa17.17■□□□□ 0.34
USP39-209ENST00000458268 ERN1O75460 977 aaKnown RBP17.17■□□□□ 0.34
USP39-209ENST00000458268 PPM1BO75688 479 aa17.17■□□□□ 0.34
USP39-209ENST00000458268 BCAS2O75934 225 aaPredicted RBP17.17■□□□□ 0.34
USP39-209ENST00000458268 CELA3AP09093 270 aa17.17■□□□□ 0.34
USP39-209ENST00000458268 BCKDHAP12694 445 aa17.17■□□□□ 0.34
USP39-209ENST00000458268 HPCAL1P37235 193 aa17.17■□□□□ 0.34
USP39-209ENST00000458268 RFX3P48380 749 aa17.17■□□□□ 0.34
USP39-209ENST00000458268 RPP38P78345 283 aaKnown RBP17.17■□□□□ 0.34
USP39-209ENST00000458268 STX3Q13277 289 aa17.17■□□□□ 0.34
USP39-209ENST00000458268 CASP8Q14790 479 aa17.17■□□□□ 0.34
USP39-209ENST00000458268 TOMM20Q15388 145 aa17.17■□□□□ 0.34
USP39-209ENST00000458268 ZNF385BQ569K4 471 aa17.17■□□□□ 0.34
USP39-209ENST00000458268 TMEM198Q66K66 360 aa17.17■□□□□ 0.34
USP39-209ENST00000458268 PAOXQ6QHF9 649 aa17.17■□□□□ 0.34
USP39-209ENST00000458268 WDR53Q7Z5U6 358 aaPredicted RBP17.17■□□□□ 0.34
USP39-209ENST00000458268 SLC44A2Q8IWA5 706 aaPredicted RBP17.17■□□□□ 0.34
USP39-209ENST00000458268 PUM2Q8TB72 1066 aaKnown RBP eCLIP17.17■□□□□ 0.34
USP39-209ENST00000458268 TMBIM1Q969X1 311 aa17.17■□□□□ 0.34
USP39-209ENST00000458268 METTL2AQ96IZ6 378 aaKnown RBP17.17■□□□□ 0.34
USP39-209ENST00000458268 ZNF597Q96LX8 424 aa17.17■□□□□ 0.34
USP39-209ENST00000458268 RILPQ96NA2 401 aa17.17■□□□□ 0.34
USP39-209ENST00000458268 EQTNQ9NQ60 294 aa17.17■□□□□ 0.34
USP39-209ENST00000458268 NKIRAS1Q9NYS0 192 aa17.17■□□□□ 0.34
USP39-209ENST00000458268 TAS2R9Q9NYW1 312 aa17.17■□□□□ 0.34
USP39-209ENST00000458268 KLRF1Q9NZS2 232 aa17.17■□□□□ 0.34
USP39-209ENST00000458268 CNOT11Q9UKZ1 510 aaKnown RBP17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms