RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 C16orf58Q96GQ5 468 aa14.17□□□□□ -0.14
LDLR-202ENST00000455727 RIPOR3Q96MK2 946 aa14.17□□□□□ -0.14
LDLR-202ENST00000455727 ROGDIQ9GZN7 287 aa14.17□□□□□ -0.14
LDLR-202ENST00000455727 SRMSQ9H3Y6 488 aa14.17□□□□□ -0.14
LDLR-202ENST00000455727 CCDC59Q9P031 241 aaKnown RBP14.17□□□□□ -0.14
LDLR-202ENST00000455727 CLEC1BQ9P126 229 aa14.17□□□□□ -0.14
LDLR-202ENST00000455727 F5P12259 2224 aa14.17□□□□□ -0.14
LDLR-202ENST00000455727 BTN3A3O00478 584 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 TNFSF14O43557 240 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 IGFBP1P08833 259 aaPredicted RBP14.16□□□□□ -0.14
LDLR-202ENST00000455727 ADRA2AP08913 450 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 NR2F6P10588 404 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 ALPPL2P10696 532 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 GSTM3P21266 225 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 MMP11P24347 488 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 CD40LGP29965 261 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 CSTF2P33240 577 aaKnown RBP eCLIP14.16□□□□□ -0.14
LDLR-202ENST00000455727 BUD31P41223 144 aaPredicted RBP14.16□□□□□ -0.14
LDLR-202ENST00000455727 PPP5CP53041 499 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 MFSD4BQ5TF39 518 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 TUBA3EQ6PEY2 450 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 TRIM69Q86WT6 500 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 SAMD14Q8IZD0 417 aaPredicted RBP14.16□□□□□ -0.14
LDLR-202ENST00000455727 GJD3Q8N144 294 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 FAM26EQ8N5C1 309 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 FLVCR1-AS1Q8TAF5 88 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 JPH3Q8WXH2 748 aaPredicted RBP14.16□□□□□ -0.14
LDLR-202ENST00000455727 POLDIP3Q9BY77 421 aaKnown RBP14.16□□□□□ -0.14
LDLR-202ENST00000455727 SLC38A1Q9H2H9 487 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 SLC28A3Q9HAS3 691 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 PRDM9Q9NQV7 894 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 GIN1Q9NXP7 522 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 MKLN1Q9UL63 735 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 FUOMA2VDF0 154 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 CCRL2O00421 344 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 AK4P27144 223 aaPredicted RBP14.16□□□□□ -0.14
LDLR-202ENST00000455727 PTGER1P34995 402 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 MC3RP41968 323 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 DGKEP52429 567 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 KHDRBS1Q07666 443 aaKnown RBP eCLIP14.16□□□□□ -0.14
LDLR-202ENST00000455727 MED22Q15528 200 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 TRIM16LQ309B1 348 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 FBXO42Q6P3S6 717 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 KCT2Q8NC54 265 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 OR9A2Q8NGT5 310 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 WDR36Q8NI36 951 aaKnown RBP14.16□□□□□ -0.14
LDLR-202ENST00000455727 OTUB1Q96FW1 271 aaPredicted RBP14.16□□□□□ -0.14
LDLR-202ENST00000455727 TMEM80Q96HE8 168 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 BMFQ96LC9 184 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 C10orf90Q96M02 699 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 OR5M11Q96RB7 305 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 TAPBPLQ9BX59 468 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 ACTRT3Q9BYD9 372 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 OR51E2Q9H255 320 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 KCNE3Q9Y6H6 103 aa14.16□□□□□ -0.14
LDLR-202ENST00000455727 GIMAP1-GIMAP5A0A087WTJ2 511 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.15□□□□□ -0.14
LDLR-202ENST00000455727 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.15□□□□□ -0.14
LDLR-202ENST00000455727 A0A1W2PS29 197 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 A6NCN8 305 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 DUXAA6NLW8 204 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 TAF4O00268 1085 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 HNRNPCP07910 306 aaKnown RBP eCLIP14.15□□□□□ -0.141e-7■■■□□ 17.1
LDLR-202ENST00000455727 SLC35G6P0C7Q6 338 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 SMIM10L1P0DMW3 83 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 MRPS21P82921 87 aaKnown RBP14.15□□□□□ -0.14
LDLR-202ENST00000455727 EFNB1P98172 346 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 CDK5Q00535 292 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 RAB30Q15771 203 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 ATAD3BQ5T9A4 648 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 OLIG3Q7RTU3 272 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 ATCAYQ86WG3 371 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 GIMAP5Q96F15 307 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 SMIM10Q96HG1 83 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 ARHGDIGQ99819 225 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 TAS2R16Q9NYV7 291 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 PHF11Q9UIL8 331 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 DSCR3O14972 297 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 AGR2O95994 175 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 ALPPP05187 535 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 ZNF888P0CJ79 500 aaPredicted RBP14.15□□□□□ -0.14
LDLR-202ENST00000455727 HSMCR30P0CW71 290 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 ACADMP11310 421 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 HNRNPA2B1P22626 353 aaKnown RBP14.15□□□□□ -0.14
LDLR-202ENST00000455727 GIPRP48546 466 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 BCAP31P51572 246 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 IFITM3Q01628 133 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 HTR4Q13639 388 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 INAVAQ3KP66 663 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 ZNF311Q5JNZ3 666 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 HEPHL1Q6MZM0 1159 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 TCEANCQ8N8B7 351 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 SNRNP27Q8WVK2 155 aaKnown RBP14.15□□□□□ -0.14
LDLR-202ENST00000455727 MRGPRX1Q96LB2 322 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 OR2A14Q96R47 310 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 SERINC2Q96SA4 455 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 ANKRD19PQ9H560 264 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 KCMF1Q9P0J7 381 aa14.15□□□□□ -0.14
LDLR-202ENST00000455727 LSM2Q9Y333 95 aaKnown RBP14.15□□□□□ -0.14
LDLR-202ENST00000455727 SCN3AQ9NY46 2000 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms