RNA–Protein interactions for RNA: ENST00000454240.1

SMARCC1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 3

Gene SMARCC1, Length 636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-203ENST00000454240 TEX37Q96LM6 180 aa25.84■■□□□ 1.73
SMARCC1-203ENST00000454240 C5orf34Q96MH7 638 aa25.84■■□□□ 1.73
SMARCC1-203ENST00000454240 VSTM2LQ96N03 204 aa25.84■■□□□ 1.73
SMARCC1-203ENST00000454240 EBF4Q9BQW3 602 aa25.84■■□□□ 1.73
SMARCC1-203ENST00000454240 CLMPQ9H6B4 373 aa25.84■■□□□ 1.73
SMARCC1-203ENST00000454240 CCDC134Q9H6E4 229 aa25.84■■□□□ 1.73
SMARCC1-203ENST00000454240 DDX18Q9NVP1 670 aaKnown RBP25.84■■□□□ 1.73
SMARCC1-203ENST00000454240 NTMQ9P121 344 aa25.84■■□□□ 1.73
SMARCC1-203ENST00000454240 ERVK-11Q9UQG0 969 aa25.84■■□□□ 1.73
SMARCC1-203ENST00000454240 COQ9O75208 318 aa25.83■■□□□ 1.73
SMARCC1-203ENST00000454240 FBXO45P0C2W1 286 aa25.83■■□□□ 1.73
SMARCC1-203ENST00000454240 IDO1P14902 403 aa25.83■■□□□ 1.73
SMARCC1-203ENST00000454240 DRD5P21918 477 aa25.83■■□□□ 1.73
SMARCC1-203ENST00000454240 CLNS1AP54105 237 aaKnown RBP25.83■■□□□ 1.73
SMARCC1-203ENST00000454240 UFM1P61960 85 aa25.83■■□□□ 1.73
SMARCC1-203ENST00000454240 SRSF11Q05519 484 aaKnown RBP25.83■■□□□ 1.73
SMARCC1-203ENST00000454240 INAQ16352 499 aa25.83■■□□□ 1.73
SMARCC1-203ENST00000454240 GSTA3Q16772 222 aa25.83■■□□□ 1.73
SMARCC1-203ENST00000454240 PGS1Q32NB8 556 aa25.83■■□□□ 1.73
SMARCC1-203ENST00000454240 CISD2Q8N5K1 135 aaKnown RBP25.83■■□□□ 1.73
SMARCC1-203ENST00000454240 TMEM178AQ8NBL3 297 aa25.83■■□□□ 1.73
SMARCC1-203ENST00000454240 OR5P2Q8WZ92 322 aa25.83■■□□□ 1.73
SMARCC1-203ENST00000454240 TMEM125Q96AQ2 219 aa25.83■■□□□ 1.73
SMARCC1-203ENST00000454240 SNRNP40Q96DI7 357 aaKnown RBP25.83■■□□□ 1.73
SMARCC1-203ENST00000454240 CCDC28BQ9BUN5 200 aa25.83■■□□□ 1.73
SMARCC1-203ENST00000454240 FOLH1BQ9HBA9 442 aa25.83■■□□□ 1.73
SMARCC1-203ENST00000454240 TCF7L2Q9NQB0 619 aa25.83■■□□□ 1.73
SMARCC1-203ENST00000454240 KLHL1Q9NR64 748 aa25.83■■□□□ 1.73
SMARCC1-203ENST00000454240 SIRT3Q9NTG7 399 aaPredicted RBP25.83■■□□□ 1.73
SMARCC1-203ENST00000454240 GPR55Q9Y2T6 319 aaPredicted RBP25.83■■□□□ 1.73
SMARCC1-203ENST00000454240 UBDO15205 165 aa25.82■■□□□ 1.72
SMARCC1-203ENST00000454240 NME2P1O60361 137 aa25.82■■□□□ 1.72
SMARCC1-203ENST00000454240 NME6O75414 186 aaPredicted RBP25.82■■□□□ 1.72
SMARCC1-203ENST00000454240 NME2P22392 152 aa25.82■■□□□ 1.72
SMARCC1-203ENST00000454240 WNT3P56703 355 aa25.82■■□□□ 1.72
SMARCC1-203ENST00000454240 TLE1Q04724 770 aa25.82■■□□□ 1.72
SMARCC1-203ENST00000454240 PDCD4Q53EL6 469 aaKnown RBP25.82■■□□□ 1.72
SMARCC1-203ENST00000454240 PRR30Q53SZ7 412 aaPredicted RBP25.82■■□□□ 1.72
SMARCC1-203ENST00000454240 OR4F3Q6IEY1 312 aa25.82■■□□□ 1.72
SMARCC1-203ENST00000454240 DND1Q8IYX4 353 aaKnown RBP25.82■■□□□ 1.72
SMARCC1-203ENST00000454240 GOLM1Q8NBJ4 401 aa25.82■■□□□ 1.72
SMARCC1-203ENST00000454240 PSMA8Q8TAA3 256 aa25.82■■□□□ 1.72
SMARCC1-203ENST00000454240 CPT1CQ8TCG5 803 aa25.82■■□□□ 1.72
SMARCC1-203ENST00000454240 STON2Q8WXE9 905 aa25.82■■□□□ 1.72
SMARCC1-203ENST00000454240 SPACA9Q96E40 222 aaPredicted RBP25.82■■□□□ 1.72
SMARCC1-203ENST00000454240 HSPBAP1Q96EW2 488 aa25.82■■□□□ 1.72
SMARCC1-203ENST00000454240 MAGED4Q96JG8 741 aa25.82■■□□□ 1.72
SMARCC1-203ENST00000454240 SGCZQ96LD1 299 aa25.82■■□□□ 1.72
SMARCC1-203ENST00000454240 BTBD9Q96Q07 612 aa25.82■■□□□ 1.72
SMARCC1-203ENST00000454240 NTNG1Q9Y2I2 539 aa25.82■■□□□ 1.72
SMARCC1-203ENST00000454240 NPFFR2Q9Y5X5 522 aa25.82■■□□□ 1.72
SMARCC1-203ENST00000454240 SHANK1Q9Y566 2161 aa25.81■■□□□ 1.72
SMARCC1-203ENST00000454240 ACOX3O15254 700 aa25.81■■□□□ 1.72
SMARCC1-203ENST00000454240 POLR3GO15318 223 aaPredicted RBP25.81■■□□□ 1.72
SMARCC1-203ENST00000454240 CT45A8P0DMV1 189 aa25.81■■□□□ 1.72
SMARCC1-203ENST00000454240 CT45A9P0DMV2 189 aa25.81■■□□□ 1.72
SMARCC1-203ENST00000454240 IL12AP29459 219 aa25.81■■□□□ 1.72
SMARCC1-203ENST00000454240 MDH1P40925 334 aaKnown RBP25.81■■□□□ 1.72
SMARCC1-203ENST00000454240 NME5P56597 212 aa25.81■■□□□ 1.72
SMARCC1-203ENST00000454240 RPS6KA2Q15349 733 aa25.81■■□□□ 1.72
SMARCC1-203ENST00000454240 MAPKAPK3Q16644 382 aa25.81■■□□□ 1.72
SMARCC1-203ENST00000454240 DPY19L1Q2PZI1 675 aa25.81■■□□□ 1.72
SMARCC1-203ENST00000454240 CT45A2Q5DJT8 189 aa25.81■■□□□ 1.72
SMARCC1-203ENST00000454240 RTL4Q6ZR62 310 aa25.81■■□□□ 1.72
SMARCC1-203ENST00000454240 GALNTL5Q7Z4T8 443 aa25.81■■□□□ 1.72
SMARCC1-203ENST00000454240 MARK4Q96L34 752 aa25.81■■□□□ 1.72
SMARCC1-203ENST00000454240 BARD1Q99728 777 aaKnown RBP25.81■■□□□ 1.72
SMARCC1-203ENST00000454240 TIMMDC1Q9NPL8 285 aa25.81■■□□□ 1.72
SMARCC1-203ENST00000454240 SDR39U1Q9NRG7 319 aaPredicted RBP25.81■■□□□ 1.72
SMARCC1-203ENST00000454240 MAP10Q9P2G4 905 aa25.81■■□□□ 1.72
SMARCC1-203ENST00000454240 COPG1Q9Y678 874 aaKnown RBP25.81■■□□□ 1.72
SMARCC1-203ENST00000454240 ZNF462Q96JM2 2506 aa25.8■■□□□ 1.72
SMARCC1-203ENST00000454240 FRG2CA6NGY1 282 aa25.8■■□□□ 1.72
SMARCC1-203ENST00000454240 E9PBE3 544 aa25.8■■□□□ 1.72
SMARCC1-203ENST00000454240 TO15178 435 aa25.8■■□□□ 1.72
SMARCC1-203ENST00000454240 SCN2BO60939 215 aa25.8■■□□□ 1.72
SMARCC1-203ENST00000454240 ERN1O75460 977 aaKnown RBP25.8■■□□□ 1.72
SMARCC1-203ENST00000454240 C6orf47O95873 294 aa25.8■■□□□ 1.72
SMARCC1-203ENST00000454240 KIR3DL1P43629 444 aa25.8■■□□□ 1.72
SMARCC1-203ENST00000454240 NRG3P56975 720 aa25.8■■□□□ 1.72
SMARCC1-203ENST00000454240 PHC1P78364 1004 aa25.8■■□□□ 1.72
SMARCC1-203ENST00000454240 NTRK2Q16620 822 aa25.8■■□□□ 1.72
SMARCC1-203ENST00000454240 TMEM64Q6YI46 380 aa25.8■■□□□ 1.72
SMARCC1-203ENST00000454240 PSD4Q8NDX1 1056 aa25.8■■□□□ 1.72
SMARCC1-203ENST00000454240 TAAR6Q96RI8 345 aa25.8■■□□□ 1.72
SMARCC1-203ENST00000454240 C3orf14Q9HBI5 128 aa25.8■■□□□ 1.72
SMARCC1-203ENST00000454240 SH2D2AQ9NP31 389 aa25.8■■□□□ 1.72
SMARCC1-203ENST00000454240 PRRC2CQ9Y520 2896 aaKnown RBP25.79■■□□□ 1.72
SMARCC1-203ENST00000454240 RNASET2O00584 256 aaKnown RBP25.79■■□□□ 1.72
SMARCC1-203ENST00000454240 EMC8O43402 210 aa25.79■■□□□ 1.72
SMARCC1-203ENST00000454240 RASAL1O95294 804 aa25.79■■□□□ 1.72
SMARCC1-203ENST00000454240 ABCD3P28288 659 aa25.79■■□□□ 1.72
SMARCC1-203ENST00000454240 NNATQ16517 81 aa25.79■■□□□ 1.72
SMARCC1-203ENST00000454240 SPANXN4Q5MJ08 99 aa25.79■■□□□ 1.72
SMARCC1-203ENST00000454240 GLB1L3Q8NCI6 653 aaPredicted RBP25.79■■□□□ 1.72
SMARCC1-203ENST00000454240 NUP43Q8NFH3 380 aa25.79■■□□□ 1.72
SMARCC1-203ENST00000454240 RFWD2Q8NHY2 731 aa25.79■■□□□ 1.72
SMARCC1-203ENST00000454240 THOC1Q96FV9 657 aaKnown RBP25.79■■□□□ 1.72
SMARCC1-203ENST00000454240 SIKE1Q9BRV8 207 aa25.79■■□□□ 1.72
SMARCC1-203ENST00000454240 NPHS2Q9NP85 383 aa25.79■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms