RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 RPP38P78345 283 aaKnown RBP17.78■□□□□ 0.44
USP40-207ENST00000450940 LTB4RQ15722 352 aa17.78■□□□□ 0.44
USP40-207ENST00000450940 ZNF628Q5EBL2 1059 aa17.78■□□□□ 0.44
USP40-207ENST00000450940 FNDC7Q5VTL7 733 aa17.78■□□□□ 0.44
USP40-207ENST00000450940 TMEM198Q66K66 360 aa17.78■□□□□ 0.44
USP40-207ENST00000450940 RTL6Q6ICC9 239 aa17.78■□□□□ 0.44
USP40-207ENST00000450940 FAM180BQ6P0A1 224 aa17.78■□□□□ 0.44
USP40-207ENST00000450940 SCIMPQ6UWF3 145 aa17.78■□□□□ 0.44
USP40-207ENST00000450940 LURAP1LQ8IV03 231 aa17.78■□□□□ 0.44
USP40-207ENST00000450940 OR5M9Q8NGP3 310 aa17.78■□□□□ 0.44
USP40-207ENST00000450940 LCORQ96JN0 433 aaPredicted RBP17.78■□□□□ 0.44
USP40-207ENST00000450940 ZNF597Q96LX8 424 aa17.78■□□□□ 0.44
USP40-207ENST00000450940 SPOCK3Q9BQ16 436 aa17.78■□□□□ 0.44
USP40-207ENST00000450940 ITPAQ9BY32 194 aa17.78■□□□□ 0.44
USP40-207ENST00000450940 TRIM8Q9BZR9 551 aa17.78■□□□□ 0.44
USP40-207ENST00000450940 UBQLN3Q9H347 655 aa17.78■□□□□ 0.44
USP40-207ENST00000450940 SPRR3Q9UBC9 169 aa17.78■□□□□ 0.44
USP40-207ENST00000450940 B4GALT7Q9UBV7 327 aa17.78■□□□□ 0.44
USP40-207ENST00000450940 PRODH2Q9UF12 536 aa17.78■□□□□ 0.44
USP40-207ENST00000450940 BCAP29Q9UHQ4 241 aa17.78■□□□□ 0.44
USP40-207ENST00000450940 FAM215AQ9Y5M1 114 aa17.78■□□□□ 0.44
USP40-207ENST00000450940 COPEO14579 308 aa17.77■□□□□ 0.44
USP40-207ENST00000450940 TO15178 435 aa17.77■□□□□ 0.44
USP40-207ENST00000450940 WDR1O75083 606 aa17.77■□□□□ 0.44
USP40-207ENST00000450940 BCAS2O75934 225 aaPredicted RBP17.77■□□□□ 0.44
USP40-207ENST00000450940 LRATO95237 230 aa17.77■□□□□ 0.44
USP40-207ENST00000450940 ANXA4P09525 319 aaPredicted RBP17.77■□□□□ 0.44
USP40-207ENST00000450940 PCSK2P16519 638 aa17.77■□□□□ 0.44
USP40-207ENST00000450940 KRT4P19013 534 aa17.77■□□□□ 0.44
USP40-207ENST00000450940 PMPCAQ10713 525 aa17.77■□□□□ 0.44
USP40-207ENST00000450940 BICRALQ6AI39 1079 aa17.77■□□□□ 0.44
USP40-207ENST00000450940 NUP54Q7Z3B4 507 aa17.77■□□□□ 0.44
USP40-207ENST00000450940 CCDC116Q8IYX3 515 aa17.77■□□□□ 0.44
USP40-207ENST00000450940 PRR22Q8IZ63 422 aa17.77■□□□□ 0.44
USP40-207ENST00000450940 ZNF295-AS1Q8N0V1 137 aa17.77■□□□□ 0.44
USP40-207ENST00000450940 OR52R1Q8NGF1 315 aa17.77■□□□□ 0.44
USP40-207ENST00000450940 NEIL3Q8TAT5 605 aa17.77■□□□□ 0.44
USP40-207ENST00000450940 FAM76AQ8TAV0 307 aa17.77■□□□□ 0.44
USP40-207ENST00000450940 HGDQ93099 445 aa17.77■□□□□ 0.44
USP40-207ENST00000450940 TMEM41AQ96HV5 264 aa17.77■□□□□ 0.44
USP40-207ENST00000450940 RILPQ96NA2 401 aa17.77■□□□□ 0.44
USP40-207ENST00000450940 TTYH2Q9BSA4 534 aa17.77■□□□□ 0.44
USP40-207ENST00000450940 C12orf65Q9H3J6 166 aaKnown RBP17.77■□□□□ 0.44
USP40-207ENST00000450940 TNFRSF12AQ9NP84 129 aa17.77■□□□□ 0.44
USP40-207ENST00000450940 SLC35C2Q9NQQ7 365 aa17.77■□□□□ 0.44
USP40-207ENST00000450940 TAS2R7Q9NYW3 318 aa17.77■□□□□ 0.44
USP40-207ENST00000450940 ACAD8Q9UKU7 415 aa17.77■□□□□ 0.44
USP40-207ENST00000450940 GPR55Q9Y2T6 319 aaPredicted RBP17.77■□□□□ 0.44
USP40-207ENST00000450940 WBP11Q9Y2W2 641 aaKnown RBP17.77■□□□□ 0.44
USP40-207ENST00000450940 PLLPQ9Y342 182 aa17.77■□□□□ 0.44
USP40-207ENST00000450940 SMIM23A6NLE4 172 aa17.76■□□□□ 0.43
USP40-207ENST00000450940 NPIPB8E9PQR5 432 aa17.76■□□□□ 0.43
USP40-207ENST00000450940 HPNP05981 417 aa17.76■□□□□ 0.43
USP40-207ENST00000450940 MRPS35P82673 323 aaKnown RBP17.76■□□□□ 0.43
USP40-207ENST00000450940 BTKQ06187 659 aa17.76■□□□□ 0.43
USP40-207ENST00000450940 CFAP157Q5JU67 520 aa17.76■□□□□ 0.43
USP40-207ENST00000450940 WLSQ5T9L3 541 aa17.76■□□□□ 0.43
USP40-207ENST00000450940 ZNF585AQ6P3V2 769 aa17.76■□□□□ 0.43
USP40-207ENST00000450940 GDF7Q7Z4P5 450 aa17.76■□□□□ 0.43
USP40-207ENST00000450940 PACS2Q86VP3 889 aa17.76■□□□□ 0.43
USP40-207ENST00000450940 METTL2AQ96IZ6 378 aaKnown RBP17.76■□□□□ 0.43
USP40-207ENST00000450940 MKS1Q9NXB0 559 aa17.76■□□□□ 0.43
USP40-207ENST00000450940 TNFRSF10DQ9UBN6 386 aa17.76■□□□□ 0.43
USP40-207ENST00000450940 CCL27Q9Y4X3 112 aa17.76■□□□□ 0.43
USP40-207ENST00000450940 FRG2CA6NGY1 282 aa17.75■□□□□ 0.43
USP40-207ENST00000450940 MYO1GB0I1T2 1018 aa17.75■□□□□ 0.43
USP40-207ENST00000450940 PLOD3O60568 738 aa17.75■□□□□ 0.43
USP40-207ENST00000450940 RSL1D1O76021 490 aaKnown RBP17.75■□□□□ 0.43
USP40-207ENST00000450940 NUDT17P0C025 328 aa17.75■□□□□ 0.43
USP40-207ENST00000450940 GLI4P10075 376 aa17.75■□□□□ 0.43
USP40-207ENST00000450940 UROSP10746 265 aa17.75■□□□□ 0.43
USP40-207ENST00000450940 GABRA1P14867 456 aa17.75■□□□□ 0.43
USP40-207ENST00000450940 IGFBP2P18065 325 aa17.75■□□□□ 0.43
USP40-207ENST00000450940 DDCP20711 480 aa17.75■□□□□ 0.43
USP40-207ENST00000450940 PRPH2P23942 346 aa17.75■□□□□ 0.43
USP40-207ENST00000450940 TFF3Q07654 80 aa17.75■□□□□ 0.43
USP40-207ENST00000450940 ZNF763Q0D2J5 394 aa17.75■□□□□ 0.43
USP40-207ENST00000450940 SNTA1Q13424 505 aa17.75■□□□□ 0.43
USP40-207ENST00000450940 SPDYAQ5MJ70 313 aa17.75■□□□□ 0.43
USP40-207ENST00000450940 LIPMQ5VYY2 423 aa17.75■□□□□ 0.43
USP40-207ENST00000450940 FAM71E1Q6IPT2 247 aa17.75■□□□□ 0.43
USP40-207ENST00000450940 B3GNT6Q6ZMB0 384 aa17.75■□□□□ 0.43
USP40-207ENST00000450940 CCDC71Q8IV32 467 aaPredicted RBP17.75■□□□□ 0.43
USP40-207ENST00000450940 C4orf33Q8N1A6 199 aa17.75■□□□□ 0.43
USP40-207ENST00000450940 RIBC1Q8N443 379 aaPredicted RBP17.75■□□□□ 0.43
USP40-207ENST00000450940 EXOSC8Q96B26 276 aaKnown RBP17.75■□□□□ 0.43
USP40-207ENST00000450940 OMA1Q96E52 524 aa17.75■□□□□ 0.43
USP40-207ENST00000450940 JSRP1Q96MG2 331 aaPredicted RBP17.75■□□□□ 0.43
USP40-207ENST00000450940 BTBD9Q96Q07 612 aa17.75■□□□□ 0.43
USP40-207ENST00000450940 EBPLQ9BY08 206 aa17.75■□□□□ 0.43
USP40-207ENST00000450940 SLC6A15Q9H2J7 730 aa17.75■□□□□ 0.43
USP40-207ENST00000450940 GIMAP4Q9NUV9 329 aa17.75■□□□□ 0.43
USP40-207ENST00000450940 MID2Q9UJV3 735 aa17.75■□□□□ 0.43
USP40-207ENST00000450940 INTS1Q8N201 2190 aaKnown RBP17.74■□□□□ 0.43
USP40-207ENST00000450940 TOXO94900 526 aa17.74■□□□□ 0.43
USP40-207ENST00000450940 SNRPB2P08579 225 aaKnown RBP17.74■□□□□ 0.43
USP40-207ENST00000450940 CT45A8P0DMV1 189 aa17.74■□□□□ 0.43
USP40-207ENST00000450940 CT45A9P0DMV2 189 aa17.74■□□□□ 0.43
USP40-207ENST00000450940 GDF1P27539 372 aa17.74■□□□□ 0.43
USP40-207ENST00000450940 MPIP34949 423 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms