RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 SECISBP2Q96T21 854 aaKnown RBP13.98□□□□□ -0.17
LIMS3-201ENST00000437679 CCT7Q99832 543 aa13.98□□□□□ -0.17
LIMS3-201ENST00000437679 STMN4Q9H169 189 aaPredicted RBP13.98□□□□□ -0.17
LIMS3-201ENST00000437679 NXF5Q9H1B4 397 aaKnown RBP13.98□□□□□ -0.17
LIMS3-201ENST00000437679 KCNK9Q9NPC2 374 aa13.98□□□□□ -0.17
LIMS3-201ENST00000437679 TAS2R7Q9NYW3 318 aa13.98□□□□□ -0.17
LIMS3-201ENST00000437679 TINAGQ9UJW2 476 aa13.98□□□□□ -0.17
LIMS3-201ENST00000437679 CNOT11Q9UKZ1 510 aaKnown RBP13.98□□□□□ -0.17
LIMS3-201ENST00000437679 BOKQ9UMX3 212 aaPredicted RBP13.98□□□□□ -0.17
LIMS3-201ENST00000437679 CHCHD2Q9Y6H1 151 aaPredicted RBP13.98□□□□□ -0.17
LIMS3-201ENST00000437679 MYO1GB0I1T2 1018 aa13.97□□□□□ -0.17
LIMS3-201ENST00000437679 LSM1O15116 133 aaKnown RBP13.97□□□□□ -0.17
LIMS3-201ENST00000437679 BIRC5O15392 142 aa13.97□□□□□ -0.17
LIMS3-201ENST00000437679 SLITRK5O94991 958 aa13.97□□□□□ -0.17
LIMS3-201ENST00000437679 ZWINTO95229 277 aa13.97□□□□□ -0.17
LIMS3-201ENST00000437679 HSPA4LO95757 839 aa13.97□□□□□ -0.17
LIMS3-201ENST00000437679 JUNP05412 331 aaKnown RBP13.97□□□□□ -0.17
LIMS3-201ENST00000437679 NAGAP17050 411 aa13.97□□□□□ -0.17
LIMS3-201ENST00000437679 DRD5P21918 477 aa13.97□□□□□ -0.17
LIMS3-201ENST00000437679 TACR1P25103 407 aa13.97□□□□□ -0.17
LIMS3-201ENST00000437679 SOX18P35713 384 aa13.97□□□□□ -0.17
LIMS3-201ENST00000437679 PPICP45877 212 aa13.97□□□□□ -0.17
LIMS3-201ENST00000437679 EMDP50402 254 aa13.97□□□□□ -0.17
LIMS3-201ENST00000437679 FOXO1Q12778 655 aa13.97□□□□□ -0.17
LIMS3-201ENST00000437679 HYAL4Q2M3T9 481 aa13.97□□□□□ -0.17
LIMS3-201ENST00000437679 UGT3A2Q3SY77 523 aa13.97□□□□□ -0.17
LIMS3-201ENST00000437679 RFTN2Q52LD8 501 aaPredicted RBP13.97□□□□□ -0.17
LIMS3-201ENST00000437679 TNFAIP8L3Q5GJ75 292 aa13.97□□□□□ -0.17
LIMS3-201ENST00000437679 ARHGAP11AQ6P4F7 1023 aa13.97□□□□□ -0.17
LIMS3-201ENST00000437679 MAMDC2Q7Z304 686 aaPredicted RBP13.97□□□□□ -0.17
LIMS3-201ENST00000437679 EID3Q8N140 333 aa13.97□□□□□ -0.17
LIMS3-201ENST00000437679 TMEM251Q8N6I4 163 aa13.97□□□□□ -0.17
LIMS3-201ENST00000437679 SIMC1Q8NDZ2 872 aa13.97□□□□□ -0.17
LIMS3-201ENST00000437679 OR6Y1Q8NGX8 325 aa13.97□□□□□ -0.17
LIMS3-201ENST00000437679 SPPL2AQ8TCT8 520 aa13.97□□□□□ -0.17
LIMS3-201ENST00000437679 GFM2Q969S9 779 aaKnown RBP13.97□□□□□ -0.17
LIMS3-201ENST00000437679 ZBTB9Q96C00 473 aa13.97□□□□□ -0.17
LIMS3-201ENST00000437679 EGLN2Q96KS0 407 aa13.97□□□□□ -0.17
LIMS3-201ENST00000437679 PPP3R2Q96LZ3 170 aa13.97□□□□□ -0.17
LIMS3-201ENST00000437679 JSRP1Q96MG2 331 aaPredicted RBP13.97□□□□□ -0.17
LIMS3-201ENST00000437679 DOHHQ9BU89 302 aa13.97□□□□□ -0.17
LIMS3-201ENST00000437679 ZDHHC11Q9H8X9 412 aa13.97□□□□□ -0.17
LIMS3-201ENST00000437679 ANKRA2Q9H9E1 313 aa13.97□□□□□ -0.17
LIMS3-201ENST00000437679 ZFP64Q9NPA5 681 aa13.97□□□□□ -0.17
LIMS3-201ENST00000437679 PLSCR2Q9NRY7 297 aa13.97□□□□□ -0.17
LIMS3-201ENST00000437679 ZDHHC2Q9UIJ5 367 aa13.97□□□□□ -0.17
LIMS3-201ENST00000437679 UTP20O75691 2785 aaKnown RBP13.97□□□□□ -0.17
LIMS3-201ENST00000437679 ATP6AP2A0A1C7CYW4 349 aa13.96□□□□□ -0.17
LIMS3-201ENST00000437679 ANKRD33BA6NCL7 494 aa13.96□□□□□ -0.17
LIMS3-201ENST00000437679 ZNHIT1O43257 154 aa13.96□□□□□ -0.17
LIMS3-201ENST00000437679 PLOD3O60568 738 aa13.96□□□□□ -0.17
LIMS3-201ENST00000437679 COQ9O75208 318 aa13.96□□□□□ -0.17
LIMS3-201ENST00000437679 PPM1BO75688 479 aa13.96□□□□□ -0.17
LIMS3-201ENST00000437679 ATP6AP2O75787 350 aa13.96□□□□□ -0.17
LIMS3-201ENST00000437679 LRATO95237 230 aa13.96□□□□□ -0.17
LIMS3-201ENST00000437679 SERPINE1P05121 402 aa13.96□□□□□ -0.17
LIMS3-201ENST00000437679 TPOP07202 933 aa13.96□□□□□ -0.17
LIMS3-201ENST00000437679 SDC1P18827 310 aa13.96□□□□□ -0.17
LIMS3-201ENST00000437679 MAPK1P28482 360 aa13.96□□□□□ -0.17
LIMS3-201ENST00000437679 ARRB2P32121 409 aa13.96□□□□□ -0.17
LIMS3-201ENST00000437679 MAGEA5P43359 124 aa13.96□□□□□ -0.17
LIMS3-201ENST00000437679 ASMTP46597 345 aa13.96□□□□□ -0.17
LIMS3-201ENST00000437679 PLCXD2Q0VAA5 305 aa13.96□□□□□ -0.17
LIMS3-201ENST00000437679 SLC10A1Q14973 349 aa13.96□□□□□ -0.17
LIMS3-201ENST00000437679 CHI3L2Q15782 390 aa13.96□□□□□ -0.17
LIMS3-201ENST00000437679 PRSS53Q2L4Q9 553 aa13.96□□□□□ -0.17
LIMS3-201ENST00000437679 ATP6AP1LQ52LC2 224 aa13.96□□□□□ -0.17
LIMS3-201ENST00000437679 TMEM198Q66K66 360 aa13.96□□□□□ -0.17
LIMS3-201ENST00000437679 RPTNQ6XPR3 784 aa13.96□□□□□ -0.17
LIMS3-201ENST00000437679 NUP54Q7Z3B4 507 aa13.96□□□□□ -0.17
LIMS3-201ENST00000437679 FGD2Q7Z6J4 655 aa13.96□□□□□ -0.17
LIMS3-201ENST00000437679 CHERPQ8IWX8 916 aaKnown RBP13.96□□□□□ -0.17
LIMS3-201ENST00000437679 OMA1Q96E52 524 aa13.96□□□□□ -0.17
LIMS3-201ENST00000437679 CCDC120Q96HB5 630 aa13.96□□□□□ -0.17
LIMS3-201ENST00000437679 ZNF597Q96LX8 424 aa13.96□□□□□ -0.17
LIMS3-201ENST00000437679 TSSK3Q96PN8 268 aa13.96□□□□□ -0.17
LIMS3-201ENST00000437679 REEP4Q9H6H4 257 aa13.96□□□□□ -0.17
LIMS3-201ENST00000437679 PROK2Q9HC23 129 aa13.96□□□□□ -0.17
LIMS3-201ENST00000437679 TAS2R9Q9NYW1 312 aa13.96□□□□□ -0.17
LIMS3-201ENST00000437679 B4GALT7Q9UBV7 327 aa13.96□□□□□ -0.17
LIMS3-201ENST00000437679 EXO1Q9UQ84 846 aaKnown RBP13.96□□□□□ -0.17
LIMS3-201ENST00000437679 GPR55Q9Y2T6 319 aaPredicted RBP13.96□□□□□ -0.17
LIMS3-201ENST00000437679 EXPH5Q8NEV8 1989 aa13.96□□□□□ -0.18
LIMS3-201ENST00000437679 A0A087WV62 115 aa13.95□□□□□ -0.18
LIMS3-201ENST00000437679 FRG2CA6NGY1 282 aa13.95□□□□□ -0.18
LIMS3-201ENST00000437679 TMEM114B3SHH9 223 aa13.95□□□□□ -0.18
LIMS3-201ENST00000437679 TO15178 435 aa13.95□□□□□ -0.18
LIMS3-201ENST00000437679 AKAP10O43572 662 aa13.95□□□□□ -0.18
LIMS3-201ENST00000437679 SKAP2O75563 359 aaPredicted RBP13.95□□□□□ -0.18
LIMS3-201ENST00000437679 SNX4O95219 450 aa13.95□□□□□ -0.18
LIMS3-201ENST00000437679 CLDN1O95832 211 aa13.95□□□□□ -0.18
LIMS3-201ENST00000437679 ABCB1P08183 1280 aaPredicted RBP13.95□□□□□ -0.18
LIMS3-201ENST00000437679 DDX5P17844 614 aaKnown RBP13.95□□□□□ -0.18
LIMS3-201ENST00000437679 ABCE1P61221 599 aaKnown RBP13.95□□□□□ -0.18
LIMS3-201ENST00000437679 PSPHP78330 225 aa13.95□□□□□ -0.18
LIMS3-201ENST00000437679 XKR7Q5GH72 579 aa13.95□□□□□ -0.18
LIMS3-201ENST00000437679 TMEM107Q6UX40 140 aa13.95□□□□□ -0.18
LIMS3-201ENST00000437679 PACS2Q86VP3 889 aa13.95□□□□□ -0.18
LIMS3-201ENST00000437679 DOLPP1Q86YN1 238 aa13.95□□□□□ -0.18
LIMS3-201ENST00000437679 SLC34A3Q8N130 599 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 123.7 ms