RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 GALNT13Q8IUC8 556 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 Q8N402 240 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 RAD51AP1Q96B01 352 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 ST6GAL2Q96JF0 529 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 PSD2Q9BQI7 771 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 ISG20L2Q9H9L3 353 aaKnown RBP8.17□□□□□ -1.1
USP40-203ENST00000427112 CPNE5Q9HCH3 593 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 ERVW-1Q9UQF0 538 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 SHISA3A0PJX4 238 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 OTOL1A6NHN0 477 aaPredicted RBP8.17□□□□□ -1.1
USP40-203ENST00000427112 H3BUI4 141 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 I3L521 148 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 SOCS5O75159 536 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 CLUP10909 449 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 ITGB8P26012 769 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 VIPR1P32241 457 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 SEC13P55735 322 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 AP1S2P56377 157 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 ST8SIA6P61647 398 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 POLR2LP62875 67 aaKnown RBP8.17□□□□□ -1.1
USP40-203ENST00000427112 FABP5Q01469 135 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 QPRTQ15274 297 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 TEAD4Q15561 434 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 TATDN3Q17R31 274 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 TTC23LQ6PF05 361 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 VN1R5Q7Z5H4 357 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 ADIPOR2Q86V24 386 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 ZNF761Q86XN6 746 aaPredicted RBP8.17□□□□□ -1.1
USP40-203ENST00000427112 NKAIN4Q8IVV8 208 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 UBTD2Q8WUN7 234 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 IRF7Q92985 503 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 CCDC120Q96HB5 630 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 TXNDC15Q96J42 360 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 LRRC3BQ96PB8 259 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 TRIM45Q9H8W5 580 aaPredicted RBP8.17□□□□□ -1.1
USP40-203ENST00000427112 SRRDQ9UH36 339 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 GRIP1Q9Y3R0 1128 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 PCDHGB1Q9Y5G3 927 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 RP1P56715 2156 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 TBC1D3BA6NDS4 549 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 ABLIM3O94929 683 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 EPCAMP16422 314 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 UQCRC1P31930 480 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 SLC9A3P48764 834 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 BLVRAP53004 296 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 CXCR4P61073 352 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 ZNF45Q02386 682 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 VEZF1Q14119 521 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 WSCD2Q2TBF2 565 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 LYPLAL1Q5VWZ2 237 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 ZNF544Q6NX49 715 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 PRICKLE2Q7Z3G6 844 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 C17orf64Q86WR6 236 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 SERPINA12Q8IW75 414 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 OR10H4Q8NGA5 316 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 OR8H1Q8NGG4 311 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 OR52I1Q8NGK6 324 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 OR4C15Q8NGM1 316 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 OR51A7Q8NH64 312 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 LILRB4Q8NHJ6 448 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 GRHL3Q8TE85 626 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 MICU1Q9BPX6 476 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 MIXL1Q9H2W2 232 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 SERHL2Q9H4I8 314 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 RC3H2Q9HBD1 1191 aaKnown RBP8.17□□□□□ -1.1
USP40-203ENST00000427112 IL36AQ9UHA7 158 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 FBXL4Q9UKA2 621 aa8.17□□□□□ -1.1
USP40-203ENST00000427112 FAM170BA6NMN3 283 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 PRRT4C9JH25 899 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 SLC31A1O15431 190 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 FGF18O76093 207 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 HMGN2P05204 90 aaKnown RBP8.16□□□□□ -1.1
USP40-203ENST00000427112 APEHP13798 732 aaKnown RBP8.16□□□□□ -1.1
USP40-203ENST00000427112 CRYBB2P43320 205 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 RAB14P61106 215 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 SREBF2Q12772 1141 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 HYAL2Q12891 473 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 NCF4Q15080 339 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 SPIN4Q56A73 249 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 BCL2L15Q5TBC7 163 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 PGBD2Q6P3X8 592 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 NXPE4Q6UWF7 544 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 ZNF547Q8IVP9 402 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 ELMOD1Q8N336 334 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 ARL14Q8N4G2 192 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 OR9A1PQ8NGU1 263 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 FBLIM1Q8WUP2 373 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 PITX2Q99697 317 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 TMEM245Q9H330 911 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 PADI2Q9Y2J8 665 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 TCF20Q9UGU0 1960 aaKnown RBP8.16□□□□□ -1.1
USP40-203ENST00000427112 TDRD6O60522 2096 aaKnown RBP8.16□□□□□ -1.1
USP40-203ENST00000427112 GRXCR2A6NFK2 248 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 IGLON5A6NGN9 336 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 HMGN4O00479 90 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 LANCL1O43813 399 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 DNAJB6O75190 326 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 KLHL18O94889 574 aa8.16□□□□□ -1.1
USP40-203ENST00000427112 CYP2A6P11509 494 aaPredicted RBP8.16□□□□□ -1.1
USP40-203ENST00000427112 C6P13671 934 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms