RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 CEBPZOSA8MTT3 80 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 GABRDO14764 452 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 OR2T1O43869 369 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 MBP02144 154 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 ADRB2P07550 413 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 VAMP3Q15836 100 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 MCATQ8IVS2 390 aaKnown RBP12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 SMIM12Q96EX1 92 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 INPP4AQ96PE3 977 aaPredicted RBP12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 CDH20Q9HBT6 801 aa12.76□□□□□ -0.37
CCDC88A-204ENST00000413716 ASTN1O14525 1302 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 P2RX6O15547 441 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 PROS1P07225 676 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 NUDT1P36639 197 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 GAREM2Q75VX8 874 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 OR5AK2Q8NH90 309 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 ZNF596Q8TC21 504 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 SLC7A13Q8TCU3 470 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 NT5C3BQ969T7 300 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 PCDHGA1Q9Y5H4 931 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 PTNP21246 168 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 NFYBP25208 207 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 GLUD2P49448 558 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 PPP4CP60510 307 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 ATP6AP1Q15904 470 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 WDR20Q8TBZ3 569 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 C10orf82Q8WW14 230 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 TRUB1Q8WWH5 349 aaKnown RBP12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 AKAP12Q02952 1782 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 UBE2Q2LH0YL09 131 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 DVL2O14641 736 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 TCAPO15273 167 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 GRPRP30550 384 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 PPP2CAP67775 309 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 BAMBIQ13145 260 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 ZNF783Q6ZMS7 281 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 KBTBD6Q86V97 674 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 OR4K1Q8NGD4 311 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 DDIT4LQ96D03 193 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 PRDM9Q9NQV7 894 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 KIF1AQ12756 1690 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 GABARAPH6UMI1 98 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 BCAS2O75934 225 aaPredicted RBP12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 GABARAPO95166 117 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 DGKEP52429 567 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 RFTN1Q14699 578 aaPredicted RBP12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 GCNT2Q8N0V5 402 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 TOMM40LQ969M1 308 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 MRPL38Q96DV4 380 aaKnown RBP12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 RNF208Q9H0X6 261 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 NUP205Q92621 2012 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 B4GALT2O60909 372 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 TMEM63AO94886 807 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 GLSO94925 669 aaPredicted RBP12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 HTR3BO95264 441 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 RFC3P40938 356 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 PTTG1IPP53801 180 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 IL10RBQ08334 325 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 KLBQ86Z14 1044 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 DTX3Q8N9I9 347 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 MKRN2Q9H000 416 aaKnown RBP12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 MINDY3Q9H8M7 445 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 DLGAP4Q9Y2H0 992 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 ANKRD63C9JTQ0 380 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 PRSS3P35030 304 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 ZNF791Q3KP31 576 aaPredicted RBP12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 KIAA0895LQ68EN5 471 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 RBMXL3Q8N7X1 1067 aaKnown RBP12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 CNIH3Q8TBE1 160 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 BIRC7Q96CA5 298 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 ZNF486Q96H40 463 aaPredicted RBP12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 MSLNLQ96KJ4 702 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 ST6GALNAC5Q9BVH7 336 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 B3GNT3Q9Y2A9 372 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 MYO3AQ8NEV4 1616 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 TMEM225BP0DP42 221 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 LRIT3Q3SXY7 679 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 UBE2NLQ5JXB2 153 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 GPR137CQ8N3F9 429 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 ZNF461Q8TAF7 563 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 TRMT2BQ96GJ1 504 aaKnown RBP12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 CDKN2AIPNLQ96HQ2 116 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 CPNE5Q9HCH3 593 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 DNAJC13O75165 2243 aa12.75□□□□□ -0.37
CCDC88A-204ENST00000413716 KDELR3O43731 214 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 C7P10643 843 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 DBPQ10586 325 aaPredicted RBP12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 FJX1Q86VR8 437 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 NETO2Q8NC67 525 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 ZFAND1Q8TCF1 268 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 SOCS2O14508 198 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 HBE1P02100 147 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 CTRB1P17538 263 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 HSD17B7P56937 341 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 FLI1Q01543 452 aaPredicted RBP12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 SLX4IPQ5VYV7 408 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 CTRB2Q6GPI1 263 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 LINC01599Q8WXQ3 324 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 ZNF597Q96LX8 424 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms