RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 FRG1Q14331 258 aaKnown RBP5.99□□□□□ -1.45
USP40-202ENST00000409945 KCNJ11Q14654 390 aa5.99□□□□□ -1.45
USP40-202ENST00000409945 C16orf72Q14CZ0 275 aa5.99□□□□□ -1.45
USP40-202ENST00000409945 TTLL9Q3SXZ7 439 aa5.99□□□□□ -1.45
USP40-202ENST00000409945 C6orf10Q5SRN2 563 aa5.99□□□□□ -1.45
USP40-202ENST00000409945 QSOX2Q6ZRP7 698 aa5.99□□□□□ -1.45
USP40-202ENST00000409945 PRSS42Q7Z5A4 293 aa5.99□□□□□ -1.45
USP40-202ENST00000409945 ARHGAP22Q7Z5H3 698 aa5.99□□□□□ -1.45
USP40-202ENST00000409945 PRUNE1Q86TP1 453 aa5.99□□□□□ -1.45
USP40-202ENST00000409945 TBC1D21Q8IYX1 336 aa5.99□□□□□ -1.45
USP40-202ENST00000409945 PDIK1LQ8N165 341 aa5.99□□□□□ -1.45
USP40-202ENST00000409945 OR13J1Q8NGT2 312 aa5.99□□□□□ -1.45
USP40-202ENST00000409945 OR8K5Q8NH50 307 aa5.99□□□□□ -1.45
USP40-202ENST00000409945 BCAS4Q8TDM0 211 aa5.99□□□□□ -1.45
USP40-202ENST00000409945 TMEM170AQ8WVE7 144 aa5.99□□□□□ -1.45
USP40-202ENST00000409945 SLC22A18Q96BI1 424 aa5.99□□□□□ -1.45
USP40-202ENST00000409945 RAB11FIP5Q9BXF6 653 aa5.99□□□□□ -1.45
USP40-202ENST00000409945 SLC7A5P2Q9GIP4 190 aa5.99□□□□□ -1.45
USP40-202ENST00000409945 NPFFR1Q9GZQ6 430 aa5.99□□□□□ -1.45
USP40-202ENST00000409945 PSD3Q9NYI0 1048 aa5.99□□□□□ -1.45
USP40-202ENST00000409945 SLC24A2Q9UI40 661 aa5.99□□□□□ -1.45
USP40-202ENST00000409945 WDR37Q9Y2I8 494 aa5.99□□□□□ -1.45
USP40-202ENST00000409945 FREM2Q5SZK8 3169 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 GSAPA4D1B5 854 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 OR6C74A6NCV1 312 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 OR5K3A6NET4 321 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 OR51F1A6NGY5 319 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 LIPT2A6NK58 231 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 H3BQF6 201 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 POLR3GO15318 223 aaPredicted RBP5.98□□□□□ -1.45
USP40-202ENST00000409945 TIPRLO75663 272 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 ZBTB11O95625 1053 aaPredicted RBP5.98□□□□□ -1.45
USP40-202ENST00000409945 FGF2P09038 288 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 DCTDP32321 178 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 BSGP35613 385 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 GRIA1P42261 906 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 EIF3BP55884 814 aaKnown RBP5.98□□□□□ -1.45
USP40-202ENST00000409945 RPS13P62277 151 aaKnown RBP5.98□□□□□ -1.45
USP40-202ENST00000409945 MC1RQ01726 317 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 HSPA14Q0VDF9 509 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 ILF2Q12905 390 aaKnown RBP5.98□□□□□ -1.45
USP40-202ENST00000409945 CALCOCO2Q13137 446 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 PRKG2Q13237 762 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 PTK6Q13882 451 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 CXorf66Q5JRM2 361 aaPredicted RBP5.98□□□□□ -1.45
USP40-202ENST00000409945 KIAA0930Q6ICG6 404 aaPredicted RBP5.98□□□□□ -1.45
USP40-202ENST00000409945 CAPRIN2Q6IMN6 1127 aaKnown RBP5.98□□□□□ -1.45
USP40-202ENST00000409945 UGT3A1Q6NUS8 523 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 FAM92BQ6ZTR7 304 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 ZNF771Q7L3S4 317 aaPredicted RBP5.98□□□□□ -1.45
USP40-202ENST00000409945 TBC1D26Q86UD7 250 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 AMIGO1Q86WK6 493 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 PIANPQ8IYJ0 282 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 C11orf65Q8NCR3 313 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 STAMBPL1Q96FJ0 436 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 FCRL4Q96PJ5 515 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 BBS4Q96RK4 519 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 RUFY1Q96T51 708 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 KRT12Q99456 494 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 TREX2Q9BQ50 279 aaPredicted RBP5.98□□□□□ -1.45
USP40-202ENST00000409945 SMYD2Q9NRG4 433 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 SLC6A13Q9NSD5 602 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 INTS10Q9NVR2 710 aaKnown RBP5.98□□□□□ -1.45
USP40-202ENST00000409945 ABI3Q9P2A4 366 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 SLC2A6Q9UGQ3 507 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 PCYOX1Q9UHG3 505 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 RARRES3Q9UL19 164 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 PCDHGB4Q9UN71 923 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 A4GNTQ9UNA3 340 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 TDRKHQ9Y2W6 561 aaKnown RBP5.98□□□□□ -1.45
USP40-202ENST00000409945 DMXL2Q8TDJ6 3036 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 SPEGQ15772 3267 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 ASPMQ8IZT6 3477 aa5.98□□□□□ -1.45
USP40-202ENST00000409945 KMT2BQ9UMN6 2715 aaPredicted RBP5.97□□□□□ -1.45
USP40-202ENST00000409945 PKD1L2Q7Z442 2459 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 TMEM247A6NEH6 219 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 GOLGA8MH3BSY2 632 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 DNALI1O14645 258 aaPredicted RBP5.97□□□□□ -1.45
USP40-202ENST00000409945 OR2C1O95371 312 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 SCGB1D1O95968 90 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 FGF3P11487 239 aaPredicted RBP5.97□□□□□ -1.45
USP40-202ENST00000409945 CCL4P13236 92 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 IL7RP16871 459 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 PGAM1P18669 254 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 RPS3P23396 243 aaKnown RBP eCLIP5.97□□□□□ -1.45
USP40-202ENST00000409945 ARF3P61204 181 aaPredicted RBP5.97□□□□□ -1.45
USP40-202ENST00000409945 CRADDP78560 199 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 ARF1P84077 181 aaKnown RBP5.97□□□□□ -1.45
USP40-202ENST00000409945 GUCY2DQ02846 1103 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 MORF4L2Q15014 288 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 TAF1BQ53T94 588 aaPredicted RBP5.97□□□□□ -1.45
USP40-202ENST00000409945 PLEKHS1Q5SXH7 462 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 ZNF626Q68DY1 528 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 NEPROQ6NW34 567 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 TTC27Q6P3X3 843 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 UNC5DQ6UXZ4 953 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 SNX32Q86XE0 403 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 KLHL7Q8IXQ5 586 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 MREGQ8N565 214 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 OR4E2Q8NGC2 313 aa5.97□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms