RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 RGS16O15492 202 aaPredicted RBP4.31□□□□□ -1.72
SF3B1-202ENST00000409915 NKX2-8O15522 239 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 LATO43561 262 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 CDH16O75309 829 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 CLN5O75503 358 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 SCGB2A1O75556 95 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 NPPAP01160 153 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 IGLV1-40P01703 118 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 APOC2P02655 101 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 WNT1P04628 370 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 RLN1P04808 185 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 PCCBP05166 539 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 CHRM4P08173 479 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 FGF4P08620 206 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 ALPIP09923 528 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 ZNF806P0C7X5 589 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 MMP9P14780 707 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 AREGP15514 252 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 ITGA2P17301 1181 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 ENGP17813 658 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 CHRM3P20309 590 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 TGM2P21980 687 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 CXCR5P32302 372 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 FDFT1P37268 417 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 MMP12P39900 470 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 KIR2DL2P43627 348 aaPredicted RBP4.31□□□□□ -1.72
SF3B1-202ENST00000409915 MTNR1AP48039 350 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 SLC9A3P48764 834 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 SUOXP51687 545 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 CLCNKAP51800 687 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 UCP2P55851 309 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 EIF3EP60228 445 aaKnown RBP4.31□□□□□ -1.72
SF3B1-202ENST00000409915 VBP1P61758 197 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 AP1S1P61966 158 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 IL9RQ01113 521 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 GALK2Q01415 458 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 RHAGQ02094 409 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 BCL2L1Q07817 233 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 SCRN3Q0VDG4 424 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 GRIK2Q13002 908 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 OLIG2Q13516 323 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 TFDP2Q14188 446 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 RFTN1Q14699 578 aaPredicted RBP4.31□□□□□ -1.72
SF3B1-202ENST00000409915 PCOLCEQ15113 449 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 PRKD1Q15139 912 aaPredicted RBP4.31□□□□□ -1.72
SF3B1-202ENST00000409915 ZMYND11Q15326 602 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 ZNF124Q15973 351 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 CSRP2Q16527 193 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 ZXDCQ2QGD7 858 aaPredicted RBP4.31□□□□□ -1.72
SF3B1-202ENST00000409915 ZNF284Q2VY69 593 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 IFI44LQ53G44 452 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 TAF1BQ53T94 588 aaPredicted RBP4.31□□□□□ -1.72
SF3B1-202ENST00000409915 C6orf136Q5SQH8 315 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 TPRG1LQ5T0D9 272 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 GRTP1Q5TC63 336 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 OGFRL1Q5TC84 451 aaPredicted RBP4.31□□□□□ -1.72
SF3B1-202ENST00000409915 SEL1L2Q5TEA6 688 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 ATG9BQ674R7 924 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 DUPD1Q68J44 220 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 PAOXQ6QHF9 649 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 NHLRC1Q6VVB1 395 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 HDDC2Q7Z4H3 204 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 PTAR1Q7Z6K3 402 aaPredicted RBP4.31□□□□□ -1.72
SF3B1-202ENST00000409915 DHDDSQ86SQ9 333 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 TSPAN33Q86UF1 283 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 TRIM69Q86WT6 500 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 HORMAD1Q86X24 394 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 NUDT13Q86X67 352 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 ZDHHC13Q8IUH4 622 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 LACC1Q8IV20 430 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 SPACA3Q8IXA5 215 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 CFAP206Q8IYR0 622 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 ZNF679Q8IYX0 411 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 BATF2Q8N1L9 274 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 TEX26Q8N6G2 289 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 C11orf44Q8N8P7 122 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 ASCC1Q8N9N2 400 aaKnown RBP4.31□□□□□ -1.72
SF3B1-202ENST00000409915 C11orf65Q8NCR3 313 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 C7orf57Q8NEG2 295 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 TSPAN14Q8NG11 270 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 SPATA22Q8NHS9 363 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 ARRDC2Q8TBH0 407 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 HM13Q8TCT9 377 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 TMEM171Q8WVE6 324 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 TFB1MQ8WVM0 346 aaKnown RBP4.31□□□□□ -1.72
SF3B1-202ENST00000409915 SLC44A1Q8WWI5 657 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 DNASE2BQ8WZ79 361 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 SLC9A6Q92581 669 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 NPIPB3Q92617 1050 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 MIB2Q96AX9 1013 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 TMEM80Q96HE8 168 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 SERAC1Q96JX3 654 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 NSMCE2Q96MF7 247 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 TTC25Q96NG3 672 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 QKIQ96PU8 341 aaKnown RBP eCLIP4.31□□□□□ -1.72
SF3B1-202ENST00000409915 MNTQ99583 582 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 IL12RB2Q99665 862 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 C17orf62Q9BQA9 187 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 INPP5KQ9BT40 448 aa4.31□□□□□ -1.72
SF3B1-202ENST00000409915 NPLQ9BXD5 320 aaPredicted RBP4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms