RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 RLIMQ9NVW2 624 aa17.76■□□□□ 0.43
USP39-202ENST00000409025 IRAK4Q9NWZ3 460 aa17.76■□□□□ 0.43
USP39-202ENST00000409025 TMCC3Q9ULS5 477 aa17.76■□□□□ 0.43
USP39-202ENST00000409025 SCN2AQ99250 2005 aa17.75■□□□□ 0.43
USP39-202ENST00000409025 IGHV5-51A0A0C4DH38 117 aa17.75■□□□□ 0.43
USP39-202ENST00000409025 ARRDC5A6NEK1 342 aa17.75■□□□□ 0.43
USP39-202ENST00000409025 ALPPP05187 535 aa17.75■□□□□ 0.43
USP39-202ENST00000409025 GABRA4P48169 554 aa17.75■□□□□ 0.43
USP39-202ENST00000409025 FNTBP49356 437 aa17.75■□□□□ 0.43
USP39-202ENST00000409025 SMIM11AP58511 58 aa17.75■□□□□ 0.43
USP39-202ENST00000409025 CHRNEQ04844 493 aa17.75■□□□□ 0.43
USP39-202ENST00000409025 CDK5R2Q13319 367 aa17.75■□□□□ 0.43
USP39-202ENST00000409025 TRMT12Q53H54 448 aaKnown RBP17.75■□□□□ 0.43
USP39-202ENST00000409025 FHL5Q5TD97 284 aa17.75■□□□□ 0.43
USP39-202ENST00000409025 NKAIN2Q5VXU1 208 aa17.75■□□□□ 0.43
USP39-202ENST00000409025 HEPHL1Q6MZM0 1159 aa17.75■□□□□ 0.43
USP39-202ENST00000409025 WDR53Q7Z5U6 358 aaPredicted RBP17.75■□□□□ 0.43
USP39-202ENST00000409025 TSPYL5Q86VY4 417 aaPredicted RBP17.75■□□□□ 0.43
USP39-202ENST00000409025 RBM45Q8IUH3 476 aaKnown RBP17.75■□□□□ 0.43
USP39-202ENST00000409025 SLC16A11Q8NCK7 471 aa17.75■□□□□ 0.43
USP39-202ENST00000409025 OR4D11Q8NGI4 311 aa17.75■□□□□ 0.43
USP39-202ENST00000409025 ANKRD9Q96BM1 317 aaPredicted RBP17.75■□□□□ 0.43
USP39-202ENST00000409025 PITX2Q99697 317 aa17.75■□□□□ 0.43
USP39-202ENST00000409025 TRIM45Q9H8W5 580 aaPredicted RBP17.75■□□□□ 0.43
USP39-202ENST00000409025 NMNAT1Q9HAN9 279 aaPredicted RBP17.75■□□□□ 0.43
USP39-202ENST00000409025 HYKKA2RU49 373 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 CCDC160A6NGH7 325 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 B4GAT1O43505 415 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 NUDT21O43809 227 aaKnown RBP17.74■□□□□ 0.43
USP39-202ENST00000409025 PLOD3O60568 738 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 NME6O75414 186 aaPredicted RBP17.74■□□□□ 0.43
USP39-202ENST00000409025 ZBTB11O95625 1053 aaPredicted RBP17.74■□□□□ 0.43
USP39-202ENST00000409025 LGI1O95970 557 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 IFI6P09912 130 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 RNH1P13489 461 aaKnown RBP17.74■□□□□ 0.43
USP39-202ENST00000409025 MAPK10P53779 464 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 GABARAPL2P60520 117 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 RPP38P78345 283 aaKnown RBP17.74■□□□□ 0.43
USP39-202ENST00000409025 BNIP3Q12983 259 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 FAM53BQ14153 422 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 ZNF311Q5JNZ3 666 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 TCTE1Q5JU00 501 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 GARNL3Q5VVW2 1013 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 LYSMD4Q5XG99 296 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 ZNF773Q6PK81 442 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 LACC1Q8IV20 430 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 SLC25A45Q8N413 288 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 OR9Q2Q8NGE9 314 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 ZNF675Q8TD23 568 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 CDS1Q92903 461 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 DSPPQ9NZW4 1301 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 M0R3H8 397 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 FOXS1O43638 330 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 NSA2O95478 260 aaKnown RBP17.74■□□□□ 0.43
USP39-202ENST00000409025 H1F0P07305 194 aaKnown RBP17.74■□□□□ 0.43
USP39-202ENST00000409025 EPHA2P29317 976 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 SOX18P35713 384 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 CTSKP43235 329 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 DHPSP49366 369 aaPredicted RBP17.74■□□□□ 0.43
USP39-202ENST00000409025 PRICKLE4Q2TBC4 344 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 FGD3Q5JSP0 725 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 BROXQ5VW32 411 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 HMGN2P46Q86SG4 172 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 SIMC1Q8NDZ2 872 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 ADAMTS18Q8TE60 1221 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 DHRS1Q96LJ7 313 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 TSC22D3Q99576 134 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 NIPSNAP1Q9BPW8 284 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 RBM38Q9H0Z9 239 aaKnown RBP17.74■□□□□ 0.43
USP39-202ENST00000409025 ADAP2Q9NPF8 381 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 HCN3Q9P1Z3 774 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 KLHL3Q9UH77 587 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 SLC13A4Q9UKG4 626 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 ACAD8Q9UKU7 415 aa17.74■□□□□ 0.43
USP39-202ENST00000409025 MRPS33Q9Y291 106 aaKnown RBP17.74■□□□□ 0.43
USP39-202ENST00000409025 BLACEA4D250 179 aa17.73■□□□□ 0.43
USP39-202ENST00000409025 E9PQ18 207 aa17.73■□□□□ 0.43
USP39-202ENST00000409025 MED26O95402 600 aa17.73■□□□□ 0.43
USP39-202ENST00000409025 SLC35E2P0CK97 266 aa17.73■□□□□ 0.43
USP39-202ENST00000409025 GNSP15586 552 aa17.73■□□□□ 0.43
USP39-202ENST00000409025 AGXTP21549 392 aa17.73■□□□□ 0.43
USP39-202ENST00000409025 NUP107P57740 925 aa17.73■□□□□ 0.43
USP39-202ENST00000409025 OR1D5P58170 312 aa17.73■□□□□ 0.43
USP39-202ENST00000409025 FOXD4Q12950 439 aaPredicted RBP17.73■□□□□ 0.43
USP39-202ENST00000409025 DCST1Q5T197 706 aa17.73■□□□□ 0.43
USP39-202ENST00000409025 LAIR2Q6ISS4 152 aa17.73■□□□□ 0.43
USP39-202ENST00000409025 COMTD1Q86VU5 262 aa17.73■□□□□ 0.43
USP39-202ENST00000409025 OR6C4Q8NGE1 309 aa17.73■□□□□ 0.43
USP39-202ENST00000409025 CNIH3Q8TBE1 160 aa17.73■□□□□ 0.43
USP39-202ENST00000409025 TMIGD2Q96BF3 282 aa17.73■□□□□ 0.43
USP39-202ENST00000409025 HRASLS5Q96KN8 279 aa17.73■□□□□ 0.43
USP39-202ENST00000409025 WFDC6Q9BQY6 131 aa17.73■□□□□ 0.43
USP39-202ENST00000409025 QRSL1Q9H0R6 528 aaKnown RBP17.73■□□□□ 0.43
USP39-202ENST00000409025 MAT2BQ9NZL9 334 aa17.73■□□□□ 0.43
USP39-202ENST00000409025 ENOPH1Q9UHY7 261 aa17.73■□□□□ 0.43
USP39-202ENST00000409025 NINQ8N4C6 2090 aa17.73■□□□□ 0.43
USP39-202ENST00000409025 IGHV1OR21-1A0A087WYE8 117 aa17.72■□□□□ 0.43
USP39-202ENST00000409025 TRBV4-1A0A0J9YWV2 114 aa17.72■□□□□ 0.43
USP39-202ENST00000409025 SLC1A7O00341 560 aa17.72■□□□□ 0.43
USP39-202ENST00000409025 SYT5O00445 386 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms