RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 TRIM69Q86WT6 500 aa19.78■□□□□ 0.76
CTCF-202ENST00000401394 ZNF547Q8IVP9 402 aa19.78■□□□□ 0.76
CTCF-202ENST00000401394 C16orf58Q96GQ5 468 aa19.78■□□□□ 0.76
CTCF-202ENST00000401394 ATF6BQ99941 703 aa19.78■□□□□ 0.76
CTCF-202ENST00000401394 SAP130Q9H0E3 1048 aa19.78■□□□□ 0.76
CTCF-202ENST00000401394 ELAC1Q9H777 363 aaKnown RBP19.78■□□□□ 0.76
CTCF-202ENST00000401394 GPBP1L1Q9HC44 474 aaPredicted RBP19.78■□□□□ 0.76
CTCF-202ENST00000401394 ZSCAN32Q9NX65 697 aa19.78■□□□□ 0.76
CTCF-202ENST00000401394 A0A1W2PQ72 361 aa19.78■□□□□ 0.76
CTCF-202ENST00000401394 A8MVJ9 347 aa19.78■□□□□ 0.76
CTCF-202ENST00000401394 NR2F1P10589 423 aa19.78■□□□□ 0.76
CTCF-202ENST00000401394 MLLT3P42568 568 aaPredicted RBP19.78■□□□□ 0.76
CTCF-202ENST00000401394 OR3A3P47888 321 aa19.78■□□□□ 0.76
CTCF-202ENST00000401394 ABATP80404 500 aa19.78■□□□□ 0.76
CTCF-202ENST00000401394 PLK5Q496M5 336 aa19.78■□□□□ 0.76
CTCF-202ENST00000401394 HTR3DQ70Z44 454 aa19.78■□□□□ 0.76
CTCF-202ENST00000401394 ZNF354BQ96LW1 612 aa19.78■□□□□ 0.76
CTCF-202ENST00000401394 EQTNQ9NQ60 294 aa19.78■□□□□ 0.76
CTCF-202ENST00000401394 SLC25A13Q9UJS0 675 aa19.78■□□□□ 0.76
CTCF-202ENST00000401394 CSNK1G3Q9Y6M4 447 aa19.78■□□□□ 0.76
CTCF-202ENST00000401394 SYNDIG1LA6NDD5 238 aa19.77■□□□□ 0.76
CTCF-202ENST00000401394 FAAHO00519 579 aa19.77■□□□□ 0.76
CTCF-202ENST00000401394 SCAMP1O15126 338 aa19.77■□□□□ 0.76
CTCF-202ENST00000401394 ELFN1P0C7U0 828 aa19.77■□□□□ 0.76
CTCF-202ENST00000401394 FAM157BP0CG42 384 aa19.77■□□□□ 0.76
CTCF-202ENST00000401394 CCT3P49368 545 aaKnown RBP19.77■□□□□ 0.76
CTCF-202ENST00000401394 GDPD1Q8N9F7 314 aa19.77■□□□□ 0.76
CTCF-202ENST00000401394 MS4A3Q96HJ5 214 aa19.77■□□□□ 0.76
CTCF-202ENST00000401394 RNF32Q9H0A6 362 aa19.77■□□□□ 0.76
CTCF-202ENST00000401394 BEX1Q9HBH7 125 aa19.77■□□□□ 0.76
CTCF-202ENST00000401394 LHX9Q9NQ69 397 aa19.77■□□□□ 0.76
CTCF-202ENST00000401394 ASF1AQ9Y294 204 aa19.77■□□□□ 0.76
CTCF-202ENST00000401394 CPSF4LA6NMK7 179 aaKnown RBP19.77■□□□□ 0.76
CTCF-202ENST00000401394 KPNA3O00505 521 aaPredicted RBP19.77■□□□□ 0.76
CTCF-202ENST00000401394 EFEMP2O95967 443 aa19.77■□□□□ 0.76
CTCF-202ENST00000401394 ARSBP15848 533 aa19.77■□□□□ 0.76
CTCF-202ENST00000401394 TBXA2RP21731 343 aa19.77■□□□□ 0.76
CTCF-202ENST00000401394 RECQLP46063 649 aaPredicted RBP19.77■□□□□ 0.76
CTCF-202ENST00000401394 LRRC56Q8IYG6 542 aaPredicted RBP19.77■□□□□ 0.76
CTCF-202ENST00000401394 NACC2Q96BF6 587 aa19.77■□□□□ 0.76
CTCF-202ENST00000401394 NEURL3Q96EH8 262 aa19.77■□□□□ 0.76
CTCF-202ENST00000401394 FUZQ9BT04 418 aa19.77■□□□□ 0.76
CTCF-202ENST00000401394 SPG21Q9NZD8 308 aa19.77■□□□□ 0.76
CTCF-202ENST00000401394 CLCA2Q9UQC9 943 aa19.77■□□□□ 0.76
CTCF-202ENST00000401394 FAM25AB3EWG3 89 aa19.77■□□□□ 0.75
CTCF-202ENST00000401394 FAM25CB3EWG5 89 aa19.77■□□□□ 0.75
CTCF-202ENST00000401394 FAM25GB3EWG6 89 aa19.77■□□□□ 0.75
CTCF-202ENST00000401394 CLDN2P57739 230 aa19.77■□□□□ 0.75
CTCF-202ENST00000401394 DUSP2Q05923 314 aa19.77■□□□□ 0.75
CTCF-202ENST00000401394 TCEA2Q15560 299 aa19.77■□□□□ 0.75
CTCF-202ENST00000401394 GDPGP1Q6ZNW5 385 aa19.77■□□□□ 0.75
CTCF-202ENST00000401394 FAM26EQ8N5C1 309 aa19.77■□□□□ 0.75
CTCF-202ENST00000401394 TTTY10Q9BZA0 68 aa19.77■□□□□ 0.75
CTCF-202ENST00000401394 CPEB1Q9BZB8 566 aaKnown RBP19.77■□□□□ 0.75
CTCF-202ENST00000401394 MED20Q9H944 212 aa19.77■□□□□ 0.75
CTCF-202ENST00000401394 SIRT4Q9Y6E7 314 aaPredicted RBP19.77■□□□□ 0.75
CTCF-202ENST00000401394 A0A087WUU8 490 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 SLC30A4O14863 429 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 CCL16O15467 120 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 LATO43561 262 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 CHRM4P08173 479 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 NR2F6P10588 404 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 ELK1P19419 428 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 LIPIQ6XZB0 460 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 QSOX2Q6ZRP7 698 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 KLBQ86Z14 1044 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 TRAM1L1Q8N609 369 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 CLDN22Q8N7P3 220 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 OR6C4Q8NGE1 309 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 OR9A1PQ8NGU1 263 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 FGF11Q92914 225 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 PHF21AQ96BD5 680 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 CCDC120Q96HB5 630 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 RBFOX1Q9NWB1 397 aaKnown RBP19.76■□□□□ 0.75
CTCF-202ENST00000401394 PDPK1O15530 556 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 FABP7O15540 132 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 ERAL1O75616 437 aaKnown RBP19.76■□□□□ 0.75
CTCF-202ENST00000401394 SOD1P00441 154 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 SOD2P04179 222 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 PEPDP12955 493 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 TYRP14679 529 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 GPR4P46093 362 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 MTNR1AP48039 350 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 PCDH1Q08174 1060 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 LASP1Q14847 261 aaKnown RBP19.76■□□□□ 0.75
CTCF-202ENST00000401394 PIP5KL1Q5T9C9 394 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 BCL2L15Q5TBC7 163 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 HIST2H2AA3Q6FI13 130 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 SLC37A3Q8NCC5 494 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 ANKK1Q8NFD2 765 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 BBS10Q8TAM1 723 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 NEIL3Q8TAT5 605 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 SUN5Q8TC36 379 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 TMEM175Q9BSA9 504 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 TRMT61BQ9BVS5 477 aaKnown RBP19.76■□□□□ 0.75
CTCF-202ENST00000401394 HDHD2Q9H0R4 259 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 NDOR1Q9UHB4 597 aa19.76■□□□□ 0.75
CTCF-202ENST00000401394 CIB4A0PJX0 185 aa19.75■□□□□ 0.75
CTCF-202ENST00000401394 GNSP15586 552 aa19.75■□□□□ 0.75
CTCF-202ENST00000401394 CPN2P22792 545 aa19.75■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms