RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 CGNL1Q0VF96 1302 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 A0A1B0GUH1 482 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 E5RGE8 158 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 CCL24O00175 119 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 BTN3A3O00478 584 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 WNT9BO14905 357 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 MDM4O15151 490 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 WISP2O76076 250 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 PGK1P00558 417 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 CST1P01037 141 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 FTH1P02794 183 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 GLAP06280 429 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 MCF2P10911 925 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 NCK1P16333 377 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 TACR3P29371 465 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 DUTP33316 252 aaKnown RBP3.73□□□□□ -1.81
HMGB1-204ENST00000399489 CD80P33681 288 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 SPAM1P38567 509 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 CDH6P55285 790 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 HNRNPH2P55795 449 aaKnown RBP3.73□□□□□ -1.81
HMGB1-204ENST00000399489 RGS8P57771 180 aaPredicted RBP3.73□□□□□ -1.81
HMGB1-204ENST00000399489 IRF8Q02556 426 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 MYBPHQ13203 477 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 ILKQ13418 452 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 GPR176Q14439 515 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 HEPACAMQ14CZ8 416 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 MAPRE2Q15555 327 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 EXT1Q16394 746 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 SBK1Q52WX2 424 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 BEX5Q5H9J7 111 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 C6orf226Q5I0X4 101 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 WSCD1Q658N2 575 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 CLEC6AQ6EIG7 209 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 KCNIP4Q6PIL6 250 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 CEACAM20Q6UY09 585 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 COLCA1Q6ZS62 124 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 COPS6Q7L5N1 327 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 ZNF367Q7RTV3 350 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 GPR142Q7Z601 462 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 COMMD2Q86X83 199 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 TGIF2LXQ8IUE1 241 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 ADHFE1Q8IWW8 467 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 TMEM99Q8N816 258 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 OR5AU1Q8NGC0 362 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 CCDC12Q8WUD4 166 aaPredicted RBP3.73□□□□□ -1.81
HMGB1-204ENST00000399489 CCDC107Q8WV48 283 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 MAIP1Q8WWC4 291 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 FAM3CQ92520 227 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 SEPT8Q92599 483 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 NRGNQ92686 78 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 PPP1R14BQ96C90 147 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 SLC25A36Q96CQ1 311 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 TMEM19Q96HH6 336 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 ZNF333Q96JL9 665 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 KRT12Q99456 494 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 KCNS3Q9BQ31 491 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 POLR3FQ9H1D9 316 aaPredicted RBP3.73□□□□□ -1.81
HMGB1-204ENST00000399489 RIMS4Q9H426 269 aaPredicted RBP3.73□□□□□ -1.81
HMGB1-204ENST00000399489 KLHL31Q9H511 634 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 FAM124BQ9H5Z6 455 aaPredicted RBP3.73□□□□□ -1.81
HMGB1-204ENST00000399489 LRRC19Q9H756 370 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 KAT8Q9H7Z6 458 aaKnown RBP3.73□□□□□ -1.81
HMGB1-204ENST00000399489 UCK1Q9HA47 277 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 UBTD1Q9HAC8 227 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 MRPL47Q9HD33 250 aaKnown RBP3.73□□□□□ -1.81
HMGB1-204ENST00000399489 SPAG4Q9NPE6 437 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 SLC52A3Q9NQ40 469 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 SLC39A1Q9NY26 324 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 MIOXQ9UGB7 285 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 VANGL2Q9ULK5 521 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 STAP1Q9ULZ2 295 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 LAMP3Q9UQV4 416 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 NSG2Q9Y328 171 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 RIPK3Q9Y572 518 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 CACNA1IQ9P0X4 2223 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 PPIAL4CA0A0B4J2A2 164 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 MEX3AA1L020 520 aaKnown RBP3.72□□□□□ -1.81
HMGB1-204ENST00000399489 TULP2O00295 520 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 NR5A2O00482 541 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 NDUFAB1O14561 156 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 EIF3HO15372 352 aaKnown RBP eCLIP3.72□□□□□ -1.81
HMGB1-204ENST00000399489 ANP32DO95626 131 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 TXNDC12O95881 172 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 HPRP00739 348 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 ANXA4P09525 319 aaPredicted RBP3.72□□□□□ -1.81
HMGB1-204ENST00000399489 PPIAL4GP0DN37 164 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 FCGR1AP12314 374 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 CD59P13987 128 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 CCNB1P14635 433 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 POU2F1P14859 743 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 ZNF10P21506 573 aaPredicted RBP3.72□□□□□ -1.81
HMGB1-204ENST00000399489 CCKBRP32239 447 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 ETV5P41161 510 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 PPP3CCP48454 512 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 NDST1P52848 882 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 PPIAP62937 165 aaKnown RBP3.72□□□□□ -1.81
HMGB1-204ENST00000399489 ZFP36L1Q07352 338 aaKnown RBP3.72□□□□□ -1.81
HMGB1-204ENST00000399489 BST2Q10589 180 aaKnown RBP3.72□□□□□ -1.81
HMGB1-204ENST00000399489 SPHARQ15513 63 aa3.72□□□□□ -1.81
HMGB1-204ENST00000399489 ITPRIPL2Q3MIP1 535 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms