RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 ZBTB26Q9HCK0 441 aa6.86□□□□□ -1.31
UPF2-203ENST00000397053 GDE1Q9NZC3 331 aa6.86□□□□□ -1.31
UPF2-203ENST00000397053 LGALS13Q9UHV8 139 aa6.86□□□□□ -1.31
UPF2-203ENST00000397053 ASCC3Q8N3C0 2202 aaKnown RBP6.85□□□□□ -1.31
UPF2-203ENST00000397053 PXDNQ92626 1479 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 FEZF1A0PJY2 475 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 SLC22A31A6NKX4 558 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 D6RAR5 112 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 F7P08709 466 aaPredicted RBP6.85□□□□□ -1.31
UPF2-203ENST00000397053 OR8U9P0C7N5 309 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 MPC1LP0DKB6 136 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 CHRNB2P17787 502 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 HOXA9P31269 272 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 NUDT1P36639 197 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 CD97P48960 835 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 CSNK2A1P68400 391 aaPredicted RBP6.85□□□□□ -1.31
UPF2-203ENST00000397053 PAFAH1B3Q15102 231 aaKnown RBP6.85□□□□□ -1.31
UPF2-203ENST00000397053 CEACAM19Q7Z692 300 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 OR5L1Q8NGL2 311 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 OR11L1Q8NGX0 322 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 NPRL2Q8WTW4 380 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 TSPEARQ8WU66 669 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 EDAQ92838 391 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 UCN3Q969E3 161 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 TOMM40LQ969M1 308 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 ASB9Q96DX5 294 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 GPR22Q99680 433 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 KDM4FA0A1W2PPD8 638 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 TVP23AA6NH52 213 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 ARGFXA6NJG6 315 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 WNT7AO00755 349 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 STC2O76061 302 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 STK17BO94768 372 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 SNAI1O95863 264 aaPredicted RBP6.85□□□□□ -1.31
UPF2-203ENST00000397053 TPOP07202 933 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 CD83Q01151 205 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 RHDQ02161 417 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 ZNF616Q08AN1 781 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 FUT2Q10981 343 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 COL28A1Q2UY09 1125 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 TUBA3EQ6PEY2 450 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 OPN5Q6U736 354 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 UGT2A3Q6UWM9 527 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 CDHR3Q6ZTQ4 885 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 TMEM25Q86YD3 366 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 IRF2BP1Q8IU81 584 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 EID2Q8N6I1 236 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 OR9I1Q8NGQ6 314 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 NEIL3Q8TAT5 605 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 FAM71F1Q96KD3 344 aaPredicted RBP6.85□□□□□ -1.31
UPF2-203ENST00000397053 ZDHHC7Q9NXF8 308 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 LOC100130705A0A1B0GUX0 176 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 hCG_1809904A0A1W2PP81 198 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 A0A1W2PPE2 198 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 A0A1W2PR64 198 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 A0A1W2PRV1 198 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 PHYHO14832 338 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 SYT7O43581 403 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 NUDT21O43809 227 aaKnown RBP6.85□□□□□ -1.31
UPF2-203ENST00000397053 ZNF623O75123 536 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 SNAPC5O75971 98 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 BEST1O76090 585 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 ADAP00813 363 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 TIMP1P01033 207 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 ALDOBP05062 364 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 CREB1P16220 341 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 PRKACGP22612 351 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 CD38P28907 300 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 HADHBP55084 474 aaKnown RBP6.85□□□□□ -1.31
UPF2-203ENST00000397053 LAPTM4AQ15012 233 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 KIAA1614Q5VZ46 1190 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 KANK2Q63ZY3 851 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 FAM43BQ6ZT52 329 aaPredicted RBP6.85□□□□□ -1.31
UPF2-203ENST00000397053 PAPD5Q8NDF8 572 aaKnown RBP6.85□□□□□ -1.31
UPF2-203ENST00000397053 PEX13Q92968 403 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 ZNF578Q96N58 590 aaPredicted RBP6.85□□□□□ -1.31
UPF2-203ENST00000397053 HES7Q9BYE0 225 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 EXTL2Q9UBQ6 330 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 SALL3Q9BXA9 1300 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 FAAHO00519 579 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 CHRM1P11229 460 aaPredicted RBP6.85□□□□□ -1.31
UPF2-203ENST00000397053 GABRA2P47869 451 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 CLCN2P51788 898 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 DOC2AQ14183 400 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 RABL3Q5HYI8 236 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 MKXQ8IYA7 352 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 TMEFF1Q8IYR6 380 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 ACVR1CQ8NER5 493 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 TBC1D20Q96BZ9 403 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 C1orf74Q96LT6 269 aa6.85□□□□□ -1.31
UPF2-203ENST00000397053 EIF5A2Q9GZV4 153 aaKnown RBP6.85□□□□□ -1.31
UPF2-203ENST00000397053 ZNF891A8MT65 544 aaPredicted RBP6.84□□□□□ -1.31
UPF2-203ENST00000397053 C17orf105B2RV13 164 aa6.84□□□□□ -1.31
UPF2-203ENST00000397053 PAHP00439 452 aa6.84□□□□□ -1.31
UPF2-203ENST00000397053 CLEC3BP05452 202 aa6.84□□□□□ -1.31
UPF2-203ENST00000397053 AKR1C4P17516 323 aa6.84□□□□□ -1.31
UPF2-203ENST00000397053 CAPN3P20807 821 aa6.84□□□□□ -1.31
UPF2-203ENST00000397053 ADH6P28332 368 aa6.84□□□□□ -1.31
UPF2-203ENST00000397053 LCN1P31025 176 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms