RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 TAS2R9Q9NYW1 312 aa20.03■□□□□ 0.8
CLN3-207ENST00000395653 C19orf53Q9UNZ5 99 aaPredicted RBP20.03■□□□□ 0.8
CLN3-207ENST00000395653 TENM4Q6N022 2769 aa20.02■□□□□ 0.8
CLN3-207ENST00000395653 ACOX3O15254 700 aa20.02■□□□□ 0.8
CLN3-207ENST00000395653 PEX1O43933 1283 aa20.02■□□□□ 0.8
CLN3-207ENST00000395653 CBX6O95503 412 aa20.02■□□□□ 0.8
CLN3-207ENST00000395653 EDN3P14138 238 aa20.02■□□□□ 0.8
CLN3-207ENST00000395653 DRD5P21918 477 aa20.02■□□□□ 0.8
CLN3-207ENST00000395653 TMED10P49755 219 aaKnown RBP20.02■□□□□ 0.8
CLN3-207ENST00000395653 DIO3P55073 304 aa20.02■□□□□ 0.8
CLN3-207ENST00000395653 MLC1Q15049 377 aa20.02■□□□□ 0.8
CLN3-207ENST00000395653 NTRK2Q16620 822 aa20.02■□□□□ 0.8
CLN3-207ENST00000395653 ZNF551Q7Z340 670 aaPredicted RBP20.02■□□□□ 0.8
CLN3-207ENST00000395653 SULF2Q8IWU5 870 aa20.02■□□□□ 0.8
CLN3-207ENST00000395653 OR2L13Q8N349 312 aa20.02■□□□□ 0.8
CLN3-207ENST00000395653 KRTCAP2Q8N6L1 136 aa20.02■□□□□ 0.8
CLN3-207ENST00000395653 POGLUT1Q8NBL1 392 aa20.02■□□□□ 0.8
CLN3-207ENST00000395653 OR7A2PQ8NGA2 310 aa20.02■□□□□ 0.8
CLN3-207ENST00000395653 HSPBAP1Q96EW2 488 aa20.02■□□□□ 0.8
CLN3-207ENST00000395653 VSTM2LQ96N03 204 aa20.02■□□□□ 0.8
CLN3-207ENST00000395653 PRPF18Q99633 342 aaKnown RBP20.02■□□□□ 0.8
CLN3-207ENST00000395653 SH2D2AQ9NP31 389 aa20.02■□□□□ 0.8
CLN3-207ENST00000395653 ATAD3AQ9NVI7 634 aa20.02■□□□□ 0.8
CLN3-207ENST00000395653 NPFFR2Q9Y5X5 522 aa20.02■□□□□ 0.8
CLN3-207ENST00000395653 PSMG1O95456 288 aa20.02■□□□□ 0.79
CLN3-207ENST00000395653 ABCD3P28288 659 aa20.02■□□□□ 0.79
CLN3-207ENST00000395653 MEOX1P50221 254 aa20.02■□□□□ 0.79
CLN3-207ENST00000395653 TDGF1P3P51864 188 aa20.02■□□□□ 0.79
CLN3-207ENST00000395653 MANFP55145 182 aaKnown RBP20.02■□□□□ 0.79
CLN3-207ENST00000395653 HSPB3Q12988 150 aa20.02■□□□□ 0.79
CLN3-207ENST00000395653 CPTPQ5TA50 214 aa20.02■□□□□ 0.79
CLN3-207ENST00000395653 CPSF7Q8N684 471 aaKnown RBP20.02■□□□□ 0.79
CLN3-207ENST00000395653 ST6GALNAC3Q8NDV1 305 aa20.02■□□□□ 0.79
CLN3-207ENST00000395653 PAQR8Q8TEZ7 354 aa20.02■□□□□ 0.79
CLN3-207ENST00000395653 COQ8BQ96D53 544 aa20.02■□□□□ 0.79
CLN3-207ENST00000395653 MAELQ96JY0 434 aaKnown RBP20.02■□□□□ 0.79
CLN3-207ENST00000395653 BTBD9Q96Q07 612 aa20.02■□□□□ 0.79
CLN3-207ENST00000395653 FOLH1BQ9HBA9 442 aa20.02■□□□□ 0.79
CLN3-207ENST00000395653 SACM1LQ9NTJ5 587 aa20.02■□□□□ 0.79
CLN3-207ENST00000395653 DDX18Q9NVP1 670 aaKnown RBP20.02■□□□□ 0.79
CLN3-207ENST00000395653 GPR55Q9Y2T6 319 aaPredicted RBP20.02■□□□□ 0.79
CLN3-207ENST00000395653 RP1L1Q8IWN7 2480 aaPredicted RBP20.01■□□□□ 0.79
CLN3-207ENST00000395653 FRG2CA6NGY1 282 aa20.01■□□□□ 0.79
CLN3-207ENST00000395653 UPK1AO00322 258 aa20.01■□□□□ 0.79
CLN3-207ENST00000395653 TO15178 435 aa20.01■□□□□ 0.79
CLN3-207ENST00000395653 P04436 131 aa20.01■□□□□ 0.79
CLN3-207ENST00000395653 LAMP1P11279 417 aa20.01■□□□□ 0.79
CLN3-207ENST00000395653 NAGAP17050 411 aa20.01■□□□□ 0.79
CLN3-207ENST00000395653 EPHA3P29320 983 aa20.01■□□□□ 0.79
CLN3-207ENST00000395653 GPC1P35052 558 aa20.01■□□□□ 0.79
CLN3-207ENST00000395653 GPR85P60893 370 aa20.01■□□□□ 0.79
CLN3-207ENST00000395653 PSPHP78330 225 aa20.01■□□□□ 0.79
CLN3-207ENST00000395653 RPS6KA2Q15349 733 aa20.01■□□□□ 0.79
CLN3-207ENST00000395653 NNATQ16517 81 aa20.01■□□□□ 0.79
CLN3-207ENST00000395653 TMEM64Q6YI46 380 aa20.01■□□□□ 0.79
CLN3-207ENST00000395653 CAMKMTQ7Z624 323 aa20.01■□□□□ 0.79
CLN3-207ENST00000395653 ZFP62Q8NB50 900 aaPredicted RBP20.01■□□□□ 0.79
CLN3-207ENST00000395653 WDR55Q9H6Y2 383 aaPredicted RBP20.01■□□□□ 0.79
CLN3-207ENST00000395653 DEPPQ9NTK1 212 aa20.01■□□□□ 0.79
CLN3-207ENST00000395653 ZNF195O14628 629 aa20■□□□□ 0.79
CLN3-207ENST00000395653 ERN1O75460 977 aaKnown RBP20■□□□□ 0.79
CLN3-207ENST00000395653 CCL3P10147 92 aa20■□□□□ 0.79
CLN3-207ENST00000395653 CNR1P21554 472 aa20■□□□□ 0.79
CLN3-207ENST00000395653 GNLYP22749 145 aa20■□□□□ 0.79
CLN3-207ENST00000395653 ALDH6A1Q02252 535 aaKnown RBP20■□□□□ 0.79
CLN3-207ENST00000395653 KCNC4Q03721 635 aa20■□□□□ 0.79
CLN3-207ENST00000395653 SLC22A10Q63ZE4 541 aa20■□□□□ 0.79
CLN3-207ENST00000395653 MAVSQ7Z434 540 aa20■□□□□ 0.79
CLN3-207ENST00000395653 SPATA19Q7Z5L4 167 aa20■□□□□ 0.79
CLN3-207ENST00000395653 FAM13CQ8NE31 585 aa20■□□□□ 0.79
CLN3-207ENST00000395653 OR10G3Q8NGC4 313 aa20■□□□□ 0.79
CLN3-207ENST00000395653 CKAP2Q8WWK9 683 aa20■□□□□ 0.79
CLN3-207ENST00000395653 MAGEB18Q96M61 343 aa20■□□□□ 0.79
CLN3-207ENST00000395653 SECISBP2Q96T21 854 aaKnown RBP20■□□□□ 0.79
CLN3-207ENST00000395653 BHLHE41Q9C0J9 482 aaPredicted RBP20■□□□□ 0.79
CLN3-207ENST00000395653 SLCO1B3Q9NPD5 702 aa20■□□□□ 0.79
CLN3-207ENST00000395653 CNIH4Q9P003 139 aa20■□□□□ 0.79
CLN3-207ENST00000395653 CHCHD2Q9Y6H1 151 aaPredicted RBP20■□□□□ 0.79
CLN3-207ENST00000395653 RELNP78509 3460 aa19.99■□□□□ 0.79
CLN3-207ENST00000395653 GOLGA8QA0A0J9YX86 632 aa19.99■□□□□ 0.79
CLN3-207ENST00000395653 A0A1W2PRB8 838 aa19.99■□□□□ 0.79
CLN3-207ENST00000395653 GOLGA8OA6NCC3 632 aa19.99■□□□□ 0.79
CLN3-207ENST00000395653 ANKUB1A6NFN9 424 aa19.99■□□□□ 0.79
CLN3-207ENST00000395653 GOLGA8NF8WBI6 632 aa19.99■□□□□ 0.79
CLN3-207ENST00000395653 TP53I11O14683 189 aa19.99■□□□□ 0.79
CLN3-207ENST00000395653 PPM1BO75688 479 aa19.99■□□□□ 0.79
CLN3-207ENST00000395653 CT45A8P0DMV1 189 aa19.99■□□□□ 0.79
CLN3-207ENST00000395653 CT45A9P0DMV2 189 aa19.99■□□□□ 0.79
CLN3-207ENST00000395653 ZNF24P17028 368 aa19.99■□□□□ 0.79
CLN3-207ENST00000395653 MST1P26927 711 aa19.99■□□□□ 0.79
CLN3-207ENST00000395653 UQCRFS1P47985 274 aa19.99■□□□□ 0.79
CLN3-207ENST00000395653 CDK9P50750 372 aaKnown RBP19.99■□□□□ 0.79
CLN3-207ENST00000395653 CT45A2Q5DJT8 189 aa19.99■□□□□ 0.79
CLN3-207ENST00000395653 FAM47EQ6ZV65 393 aa19.99■□□□□ 0.79
CLN3-207ENST00000395653 PRR22Q8IZ63 422 aa19.99■□□□□ 0.79
CLN3-207ENST00000395653 FBXW8Q8N3Y1 598 aa19.99■□□□□ 0.79
CLN3-207ENST00000395653 OR2M7Q8NG81 312 aa19.99■□□□□ 0.79
CLN3-207ENST00000395653 ACTRT2Q8TDY3 377 aa19.99■□□□□ 0.79
CLN3-207ENST00000395653 FAM173AQ9BQD7 235 aa19.99■□□□□ 0.79
CLN3-207ENST00000395653 DUSP26Q9BV47 211 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 393.9 ms