RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 SLAMF7Q9NQ25 335 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 PADI3Q9ULW8 664 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 DIRAS3O95661 229 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 ETFAP13804 333 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 IFNGR1P15260 489 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 HTD2P86397 168 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 RIN1Q13671 783 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 ZNF546Q86UE3 836 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 ZNF679Q8IYX0 411 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 ZNF619Q8N2I2 560 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 RHEBL1Q8TAI7 183 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 SPATA31A5Q5VU36 1347 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 SPATA31A7Q8IWB4 1347 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 ZNF541Q9H0D2 1346 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 PPRC1Q5VV67 1664 aaKnown RBP11.31□□□□□ -0.6
SYNPO-202ENST00000394243 LILRB5O75023 590 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 FGF19O95750 216 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 EIF4HQ15056 248 aaKnown RBP11.3□□□□□ -0.6
SYNPO-202ENST00000394243 STK11Q15831 433 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 HIST2H3PS2Q5TEC6 136 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 LIPJQ5W064 366 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 P4HA3Q7Z4N8 544 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 SLC30A3Q99726 388 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 PPP4R1LQ9P1A2 415 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 ICKQ9UPZ9 632 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 RNF215Q9Y6U7 377 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 B4GALT2O60909 372 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 OSMP13725 252 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 FAM189BP81408 668 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 SCGB2A2Q13296 93 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 PAN3Q58A45 887 aaKnown RBP11.3□□□□□ -0.6
SYNPO-202ENST00000394243 PLAG1Q6DJT9 500 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 SMPDL3AQ92484 453 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 SLC6A16Q9GZN6 736 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 IL36AQ9UHA7 158 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 MYH13Q9UKX3 1938 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 MDFIC2A0A1B0GVS7 189 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 DDNO94850 711 aaPredicted RBP11.3□□□□□ -0.6
SYNPO-202ENST00000394243 CAV3P56539 151 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 FPGSQ05932 587 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 REM2Q8IYK8 340 aaPredicted RBP11.3□□□□□ -0.6
SYNPO-202ENST00000394243 NRSN1Q8IZ57 195 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 MAPK15Q8TD08 544 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 ELP4Q96EB1 424 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 IL12RB2Q99665 862 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 SMIM3Q9BZL3 60 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 DUS2Q9NX74 493 aaKnown RBP11.3□□□□□ -0.6
SYNPO-202ENST00000394243 HLA-EP13747 358 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 TPMTP51580 245 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 RNF4P78317 190 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 ZNF169Q14929 603 aaPredicted RBP11.3□□□□□ -0.6
SYNPO-202ENST00000394243 MICAQ29983 383 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 AVPI1Q5T686 147 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 TANGO2Q6ICL3 276 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 TMEM173Q86WV6 379 aaPredicted RBP11.3□□□□□ -0.6
SYNPO-202ENST00000394243 OR5D16Q8NGK9 328 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 GIMAP1Q8WWP7 306 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 KCNJ9Q92806 393 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 DPYSL5Q9BPU6 564 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 CROCCQ5TZA2 2017 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 NID2Q14112 1375 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 FAM230AA0A1W2PPH8 454 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 POP7O75817 140 aaKnown RBP11.3□□□□□ -0.6
SYNPO-202ENST00000394243 PLGP00747 810 aaPredicted RBP11.3□□□□□ -0.6
SYNPO-202ENST00000394243 ADAP00813 363 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 LIPCP11150 499 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 RIDAP52758 137 aaKnown RBP11.3□□□□□ -0.6
SYNPO-202ENST00000394243 ZNF425Q6IV72 752 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 FUT10Q6P4F1 479 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 SLC35F5Q8WV83 523 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 KCNK12Q9HB15 430 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 OARD1Q9Y530 152 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 TMEM14AQ9Y6G1 99 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 FADS1O60427 444 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 SERPINA7P05543 415 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 NR2C1P13056 603 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 CBR1P16152 277 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 ENDOUP21128 410 aaKnown RBP11.3□□□□□ -0.6
SYNPO-202ENST00000394243 SH3BP2P78314 561 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 PXDC1Q5TGL8 231 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 ANKK1Q8NFD2 765 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 OR9A1PQ8NGU1 263 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 OR5W2Q8NH69 310 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 MICU1Q9BPX6 476 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 MRIQ9BWK5 157 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 METTL17Q9H7H0 456 aaPredicted RBP11.3□□□□□ -0.6
SYNPO-202ENST00000394243 NOX3Q9HBY0 568 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 B3GAT2Q9NPZ5 323 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 DNAJC15Q9Y5T4 150 aa11.3□□□□□ -0.6
SYNPO-202ENST00000394243 TNFRSF10BO14763 440 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 MED6O75586 246 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 NFATC1O95644 943 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 JUNDP17535 347 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 RPS5P46782 204 aaKnown RBP11.29□□□□□ -0.6
SYNPO-202ENST00000394243 CDKN2DP55273 166 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 SEC13P55735 322 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 ERVFC1P60507 584 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 POU6F2P78424 691 aaPredicted RBP11.29□□□□□ -0.6
SYNPO-202ENST00000394243 SLAMF1Q13291 335 aa11.29□□□□□ -0.6
SYNPO-202ENST00000394243 FAM205BPQ63HN1 556 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms