RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 ETFAP13804 333 aa9.71□□□□□ -0.85
COL6A3-205ENST00000392004 CASRP41180 1078 aa9.71□□□□□ -0.85
COL6A3-205ENST00000392004 LRRC25Q8N386 305 aaPredicted RBP9.71□□□□□ -0.85
COL6A3-205ENST00000392004 GOLM1Q8NBJ4 401 aa9.71□□□□□ -0.85
COL6A3-205ENST00000392004 MINDY2Q8NBR6 621 aa9.71□□□□□ -0.85
COL6A3-205ENST00000392004 DAZLQ92904 295 aaKnown RBP9.71□□□□□ -0.85
COL6A3-205ENST00000392004 ADOQ96SZ5 270 aa9.71□□□□□ -0.85
COL6A3-205ENST00000392004 IRF2BPLQ9H1B7 796 aa9.71□□□□□ -0.85
COL6A3-205ENST00000392004 GMPR2Q9P2T1 348 aaKnown RBP9.71□□□□□ -0.85
COL6A3-205ENST00000392004 WDR45Q9Y484 360 aa9.71□□□□□ -0.85
COL6A3-205ENST00000392004 NSG1A0A0A6YYJ2 146 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 TRBC2A0A5B9 178 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 FAM234BA2RU67 622 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 ARGFXA6NJG6 315 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 LSM1O15116 133 aaKnown RBP9.71□□□□□ -0.86
COL6A3-205ENST00000392004 FRS3O43559 492 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 HLA-DQA2P01906 255 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 SBK3P0C264 359 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 MATN1P21941 496 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 HRH2P25021 359 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 DCDP81605 110 aaKnown RBP9.71□□□□□ -0.86
COL6A3-205ENST00000392004 MANEAQ5SRI9 462 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 ABHD17BQ5VST6 288 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 C8orf59Q8N0T1 100 aaPredicted RBP9.71□□□□□ -0.86
COL6A3-205ENST00000392004 CLEC1AQ8NC01 280 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 OR4K17Q8NGC6 315 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 GPR78Q96P69 363 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 CGREF1Q99674 301 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 FNDC11Q9BVV2 318 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 TEX12Q9BXU0 123 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 MFRPQ9BY79 579 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 SLC6A16Q9GZN6 736 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 RIBC2Q9H4K1 309 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 OCIAD1Q9NX40 245 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 EPHA6Q9UF33 1036 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 SAMHD1Q9Y3Z3 626 aaKnown RBP9.71□□□□□ -0.86
COL6A3-205ENST00000392004 CORINQ9Y5Q5 1042 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 THADAQ6YHU6 1953 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 TSPAN11A1L157 253 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 GFYI3L273 518 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 K7ESF4 209 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 NME4O00746 187 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 RFPL3O75679 317 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 SNAP29O95721 258 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 PEPDP12955 493 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 DLSTP36957 453 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 GUCA1AP43080 201 aaPredicted RBP9.71□□□□□ -0.86
COL6A3-205ENST00000392004 GPR85P60893 370 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 PLCXD2Q0VAA5 305 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 NEK10Q6ZWH5 1172 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 FAM174AQ8TBP5 190 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 MUC13Q9H3R2 512 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 TAS2R9Q9NYW1 312 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 ST14Q9Y5Y6 855 aa9.71□□□□□ -0.86
COL6A3-205ENST00000392004 TNFRSF1BP20333 461 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 NR4A1P22736 598 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 RFC3P40938 356 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 CTSKP43235 329 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 ATP4BP51164 291 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 LARS2Q15031 903 aaKnown RBP9.7□□□□□ -0.86
COL6A3-205ENST00000392004 THOC7Q6I9Y2 204 aaKnown RBP9.7□□□□□ -0.86
COL6A3-205ENST00000392004 LCN8Q6JVE9 175 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 EPHX4Q8IUS5 362 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 OR13F1Q8NGS4 319 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 TSLPQ969D9 159 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 MS4A12Q9NXJ0 267 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 SLAMF8Q9P0V8 285 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 PILRBQ9UKJ0 227 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 MEN1O00255 615 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 YKT6O15498 198 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 B4GAT1O43505 415 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 ABCB7O75027 752 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 CD1CP29017 333 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 HOXC5Q00444 222 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 ATG9BQ674R7 924 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 C6orf120Q7Z4R8 191 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 SPRED1Q7Z699 444 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 THAP5Q7Z6K1 395 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 GALNT5Q7Z7M9 940 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 SLCO6A1Q86UG4 719 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 PEX5LQ8IYB4 626 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 ABHD11Q8NFV4 315 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 OR4C6Q8NH72 309 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 LRRC58Q96CX6 371 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 PDLIM5Q96HC4 596 aaKnown RBP9.7□□□□□ -0.86
COL6A3-205ENST00000392004 TWSG1Q9GZX9 223 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 REEP1Q9H902 201 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 MED16Q9Y2X0 877 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 C1orf226A1L170 272 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 GALR2O43603 387 aaPredicted RBP9.7□□□□□ -0.86
COL6A3-205ENST00000392004 HYAL3O43820 417 aaPredicted RBP9.7□□□□□ -0.86
COL6A3-205ENST00000392004 ETHE1O95571 254 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 AIFM1O95831 613 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 HIST1H2ABP04908 130 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 INHBBP09529 407 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 HSD17B1P14061 328 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 ELK4P28324 431 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 OPRL1P41146 370 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 DSTNP60981 165 aa9.7□□□□□ -0.86
COL6A3-205ENST00000392004 ARG2P78540 354 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms