RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 B3GALT4O96024 378 aa13.7□□□□□ -0.22
TCOF1-202ENST00000377797 RAB39AQ14964 217 aa13.7□□□□□ -0.22
TCOF1-202ENST00000377797 LRIT3Q3SXY7 679 aa13.7□□□□□ -0.22
TCOF1-202ENST00000377797 PTRH1Q86Y79 214 aaKnown RBP13.7□□□□□ -0.22
TCOF1-202ENST00000377797 MFSD2AQ8NA29 543 aa13.7□□□□□ -0.22
TCOF1-202ENST00000377797 UBASH3BQ8TF42 649 aa13.7□□□□□ -0.22
TCOF1-202ENST00000377797 TM4SF18Q96CE8 201 aa13.7□□□□□ -0.22
TCOF1-202ENST00000377797 SGPP1Q9BX95 441 aa13.7□□□□□ -0.22
TCOF1-202ENST00000377797 KCNN2Q9H2S1 579 aa13.7□□□□□ -0.22
TCOF1-202ENST00000377797 SERINC1Q9NRX5 453 aa13.7□□□□□ -0.22
TCOF1-202ENST00000377797 STMN3Q9NZ72 180 aa13.7□□□□□ -0.22
TCOF1-202ENST00000377797 CLEC4AQ9UMR7 237 aa13.7□□□□□ -0.22
TCOF1-202ENST00000377797 KCNK5O95279 499 aa13.7□□□□□ -0.22
TCOF1-202ENST00000377797 SLC6A6P31641 620 aa13.7□□□□□ -0.22
TCOF1-202ENST00000377797 BCL6P41182 706 aa13.7□□□□□ -0.22
TCOF1-202ENST00000377797 XCR1P46094 333 aa13.7□□□□□ -0.22
TCOF1-202ENST00000377797 GCGRP47871 477 aa13.7□□□□□ -0.22
TCOF1-202ENST00000377797 PLCXD2Q0VAA5 305 aa13.7□□□□□ -0.22
TCOF1-202ENST00000377797 PON3Q15166 354 aa13.7□□□□□ -0.22
TCOF1-202ENST00000377797 CEP78Q5JTW2 689 aa13.7□□□□□ -0.22
TCOF1-202ENST00000377797 C18orf63Q68DL7 685 aa13.7□□□□□ -0.22
TCOF1-202ENST00000377797 CWF19L1Q69YN2 538 aaKnown RBP13.7□□□□□ -0.22
TCOF1-202ENST00000377797 ZC3H14Q6PJT7 736 aaKnown RBP13.7□□□□□ -0.22
TCOF1-202ENST00000377797 IZUMO1Q8IYV9 350 aa13.7□□□□□ -0.22
TCOF1-202ENST00000377797 FAM160A2Q8N612 972 aaPredicted RBP13.7□□□□□ -0.22
TCOF1-202ENST00000377797 KIAA1958Q8N8K9 716 aa13.7□□□□□ -0.22
TCOF1-202ENST00000377797 TMEM102Q8N9M5 508 aaPredicted RBP13.7□□□□□ -0.22
TCOF1-202ENST00000377797 METTL7AQ9H8H3 244 aa13.7□□□□□ -0.22
TCOF1-202ENST00000377797 TMEM9Q9P0T7 183 aa13.7□□□□□ -0.22
TCOF1-202ENST00000377797 PCDHGB7Q9Y5F8 929 aa13.7□□□□□ -0.22
TCOF1-202ENST00000377797 MICAL3Q7RTP6 2002 aa13.7□□□□□ -0.22
TCOF1-202ENST00000377797 SEC16AO15027 2179 aa13.7□□□□□ -0.22
TCOF1-202ENST00000377797 SCO2O43819 266 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 SMAD4Q13485 552 aaKnown RBP13.69□□□□□ -0.22
TCOF1-202ENST00000377797 TUBA3CQ13748 450 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 SERTAD2Q14140 314 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 CLCA4Q14CN2 919 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 MICAQ29983 383 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 CCL4L1Q8NHW4 92 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 PATE1Q8WXA2 126 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 S100A13Q99584 98 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 CXorf36Q9H7Y0 433 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 NMNAT1Q9HAN9 279 aaPredicted RBP13.69□□□□□ -0.22
TCOF1-202ENST00000377797 ZNF225Q9UK10 706 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 AKAP8O43823 692 aaKnown RBP13.69□□□□□ -0.22
TCOF1-202ENST00000377797 GPR75O95800 540 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 JMJD7P0C870 316 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 SRFP11831 508 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 ZNF24P17028 368 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 AZGP1P25311 298 aaKnown RBP13.69□□□□□ -0.22
TCOF1-202ENST00000377797 MAP2K4P45985 399 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 GPR4P46093 362 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 TMEM80Q96HE8 168 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 TMEM165Q9HC07 324 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 SPHK1Q9NYA1 384 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 C7orf72A4D263 438 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 PLRG1O43660 514 aaKnown RBP13.69□□□□□ -0.22
TCOF1-202ENST00000377797 PRKRAO75569 313 aaKnown RBP13.69□□□□□ -0.22
TCOF1-202ENST00000377797 AHSA1O95433 338 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 MEDAGQ5VYS4 303 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 FAM71E1Q6IPT2 247 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 ABHD17CQ6PCB6 329 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 USP43Q70EL4 1123 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 TMEM151BQ8IW70 566 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 OR2T33Q8NG76 320 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 OR4K17Q8NGC6 315 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 FAM174AQ8TBP5 190 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 TREX2Q9BQ50 279 aaPredicted RBP13.69□□□□□ -0.22
TCOF1-202ENST00000377797 ZBTB20Q9HC78 741 aaPredicted RBP13.69□□□□□ -0.22
TCOF1-202ENST00000377797 MKL2Q9ULH7 1088 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 CEACAM5P06731 702 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 ZNF823P16415 610 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 GPX2P18283 190 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 SFTPA1Q8IWL2 248 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 FANK1Q8TC84 345 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 LINC00615Q96LM1 132 aaPredicted RBP13.69□□□□□ -0.22
TCOF1-202ENST00000377797 OR4K3Q96R72 315 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 ATG4BQ9Y4P1 393 aa13.69□□□□□ -0.22
TCOF1-202ENST00000377797 TSPAN11A1L157 253 aa13.68□□□□□ -0.22
TCOF1-202ENST00000377797 PRAMEF2O60811 474 aa13.68□□□□□ -0.22
TCOF1-202ENST00000377797 CNR2P34972 360 aa13.68□□□□□ -0.22
TCOF1-202ENST00000377797 RORAP35398 523 aa13.68□□□□□ -0.22
TCOF1-202ENST00000377797 RPS3AP61247 264 aaKnown RBP13.68□□□□□ -0.22
TCOF1-202ENST00000377797 GBX1Q14549 363 aa13.68□□□□□ -0.22
TCOF1-202ENST00000377797 CDKN3Q16667 212 aa13.68□□□□□ -0.22
TCOF1-202ENST00000377797 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.68□□□□□ -0.22
TCOF1-202ENST00000377797 HSPBAP1Q96EW2 488 aa13.68□□□□□ -0.22
TCOF1-202ENST00000377797 KCNS3Q9BQ31 491 aa13.68□□□□□ -0.22
TCOF1-202ENST00000377797 MND1Q9BWT6 205 aa13.68□□□□□ -0.22
TCOF1-202ENST00000377797 PEX16Q9Y5Y5 336 aa13.68□□□□□ -0.22
TCOF1-202ENST00000377797 FXYD1O00168 92 aa13.68□□□□□ -0.22
TCOF1-202ENST00000377797 STSP08842 583 aa13.68□□□□□ -0.22
TCOF1-202ENST00000377797 EXOSC7Q15024 291 aaKnown RBP13.68□□□□□ -0.22
TCOF1-202ENST00000377797 MZT2BQ6NZ67 158 aa13.68□□□□□ -0.22
TCOF1-202ENST00000377797 PROKR2Q8NFJ6 384 aa13.68□□□□□ -0.22
TCOF1-202ENST00000377797 PHF12Q96QT6 1004 aa13.68□□□□□ -0.22
TCOF1-202ENST00000377797 SPRTNQ9H040 489 aaPredicted RBP13.68□□□□□ -0.22
TCOF1-202ENST00000377797 SRPX2O60687 465 aaPredicted RBP13.68□□□□□ -0.22
TCOF1-202ENST00000377797 CPMP14384 443 aa13.68□□□□□ -0.22
TCOF1-202ENST00000377797 VLDLRP98155 873 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms